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A Bayesian nonparametric approach to the study of species diversity based on choosing a random discrete distribution as a prior model for the unknown relative abundances of species has been recently introduced in Lijoi et al. (2007, 2008).…

统计理论 · 数学 2012-03-09 Annalisa Cerquetti

Quantifying diversity is of central importance for the study of structure, function and evolution of microbial communities. The estimation of microbial diversity has received renewed attention with the advent of large-scale metagenomic…

种群与进化 · 定量生物学 2013-08-06 Bart Haegeman , Jérôme Hamelin , John Moriarty , Peter Neal , Jonathan Dushoff , Joshua S. Weitz

Moran or Wright-Fisher processes are probably the most well known model to study the evolution of a population under various effects. Our object of study will be the Simpson index which measures the level of diversity of the population, one…

概率论 · 数学 2018-09-25 Arnaud Personne , Arnaud Guillin , Franck Jabot , Arnaud Guillin

Survey sampling plays an important role in the efficient allocation and management of resources. The essence of survey sampling lies in acquiring a sample of data points from a population and subsequently using this sample to estimate the…

统计方法学 · 统计学 2024-01-29 Jonne Pohjankukka , Sakari Tuominen , Jukka Heikkonen

We propose a truncation model for abundance distribution in the species richness estimation. This model is inherently semiparametric and incorporates an unknown truncation threshold between rare and abundant counts observations. Using the…

统计方法学 · 统计学 2017-05-23 François Koladjo , Mesrob I. Ohannessian , Élisabeth Gassiat

Variable selection in sparse regression models is an important task as applications ranging from biomedical research to econometrics have shown. Especially for higher dimensional regression problems, for which the link function between…

机器学习 · 统计学 2019-12-10 Burim Ramosaj , Markus Pauly

Difficulties identifying appropriate biodiversity impact metrics remain a major barrier to inclusion of biodiversity considerations in environmentally responsible investment. We propose and analyse a simple science-based local metric: the…

种群与进化 · 定量生物学 2023-03-21 Axel G. Rossberg , Jacob D. O'Sullivan , Svetlana Malysheva , Nadav M. Shnerb

In ecological studies niche overlap is often used to quantify species interaction and dynamics. This paper develops a robust, nonparametric statistical framework for quantifying and analyzing multivariate niche overlap. Parametric methods…

统计方法学 · 统计学 2026-04-08 Jonas Beck , Solomon Harrar

This paper serves a twofold purpose. First, a unified perspective on diversity indices is introduced based on an entropic basis. It is shown that the class of all linear combinations of the entropic basis, referred to as the class of linear…

统计理论 · 数学 2020-01-22 Zhiyi Zhang , Michael Grabchak

Seismic inversion is essential for geophysical exploration and geological assessment, but it is inherently subject to significant uncertainty. This uncertainty stems primarily from the limited information provided by observed seismic data,…

地球物理 · 物理学 2024-09-12 Luping Qu , Mauricio Araya-Polo , Laurent Demanet

In this paper entropy based methods are compared and used to measure structural diversity of an ensemble of 21 classifiers. This measure is mostly applied in ecology, whereby species counts are used as a measure of diversity. The measures…

机器学习 · 计算机科学 2008-10-21 L. Masisi , V. Nelwamondo , T. Marwala

Accurate estimates of microbial species abundances are needed to advance our understanding of the role that microbiomes play in human and environmental health. However, artificially constructed microbiomes demonstrate that intuitive…

统计方法学 · 统计学 2025-03-17 David S Clausen , Amy D Willis

Entropy measures of probability distributions are widely used measures in ecology, biology, genetics, and in other fields, to quantify species diversity of a community. Unfortunately, entropy-based diversity indices, or diversity indices…

种群与进化 · 定量生物学 2014-08-14 Karim T. Abou-Moustafa

We present an in-depth analysis of the sources of variance in state-of-the-art unbiased volumetric transmittance estimators, and propose several new methods for improving their efficiency. These combine to produce a single estimator that is…

图形学 · 计算机科学 2021-08-20 Markus Kettunen , Eugene d'Eon , Jacopo Pantaleoni , Jan Novak

Diversity measurement underpins the study of biological systems, but measures used vary across disciplines. Despite their common use and broad utility, no unified framework has emerged for measuring, comparing and partitioning diversity.…

Systematic sampling is often used to select plot locations for forest inventory estimation. However, it is not possible to derive a design-unbiased variance estimator for a systematic sample using one random start. As a result, many forest…

应用统计 · 统计学 2018-10-22 Chad Babcock , Andrew O. Finley , Timothy G. Gregoire , Hans-Erik Andersen

Random sampling is an essential tool in the processing and transmission of data. It is used to summarize data too large to store or manipulate and meet resource constraints on bandwidth or battery power. Estimators that are applied to the…

数据库 · 计算机科学 2015-03-19 Edith Cohen , Haim Kaplan

Statistical multispecies models of multiarea marine ecosystems use a variety of data sources to estimate parameters using composite or weighted likelihood functions with associated weighting issues and questions on how to obtain variance…

应用统计 · 统计学 2012-02-16 Lorna Taylor , Verena M. Trenkel , Vojtech Kupca , Gunnar Stefansson

Uncertainty sampling in active learning is heavily used in practice to reduce the annotation cost. However, there has been no wide consensus on the function to be used for uncertainty estimation in binary classification tasks and…

机器学习 · 计算机科学 2021-11-01 Anant Raj , Francis Bach

Infinite-order U-statistics (IOUS) has been used extensively on subbagging ensemble learning algorithms such as random forests to quantify its uncertainty. While normality results of IOUS have been studied extensively, its variance…

机器学习 · 统计学 2023-02-16 Tianning Xu , Ruoqing Zhu , Xiaofeng Shao
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