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Given experimental data, one of the main objectives of biological modeling is to construct a model which best represents the real world phenomena. In some cases, there could be multiple distinct models exhibiting the exact same dynamics,…

组合数学 · 数学 2024-12-03 Cashous Bortner , John Gilliana , Dev Patel , Zaia Tamras

We introduce a class of linear compartmental models called identifiable path/cycle models which have the property that all of the monomial functions of parameters associated to the directed cycles and paths from input compartments to output…

代数几何 · 数学 2021-09-01 Cashous Bortner , Nicolette Meshkat

The parameters of a linear compartment model are usually estimated from experimental input-output data. A problem arises when infinitely many parameter values can yield the same result; such a model is called unidentifiable. In this case,…

组合数学 · 数学 2016-03-08 Jasmijn A. Baaijens , Jan Draisma

A foundational question in the theory of linear compartmental models is how to assess whether a model is structurally identifiable -- that is, whether parameter values can be inferred from noiseless data -- directly from the combinatorics…

动力系统 · 数学 2024-02-19 Cashous Bortner , Elizabeth Gross , Nicolette Meshkat , Anne Shiu , Seth Sullivant

Linear compartmental models are a widely used tool for analyzing systems arising in biology, medicine, and more. In such settings, it is essential to know whether model parameters can be recovered from experimental data. This is the…

Identifiability concerns finding which unknown parameters of a model can be quantified from given input-output data. Many linear ODE models, used in systems biology and pharmacokinetics, are unidentifiable, which means that parameters can…

代数几何 · 数学 2013-12-12 Nicolette Meshkat , Seth Sullivant

Identifiability concerns finding which unknown parameters of a model can be estimated from given input-output data. If some subset of the parameters of a model cannot be determined given input-output data, then we say the model is…

代数几何 · 数学 2014-11-03 Nicolette Meshkat , Seth Sullivant , Marisa Eisenberg

A parameter of a mathematical model is structurally identifiable if it can be determined from noiseless experimental data. Here, we examine the identifiability properties of two important classes of linear compartmental models:…

Exploiting the indistinguishability of objects in a probabilistic graphical model such as a factor graph is key to lifted probabilistic inference algorithms and allows for tractable probabilistic inference problems with respect to domain…

人工智能 · 计算机科学 2026-05-27 Malte Luttermann , Ralf Möller , Marcel Gehrke

Structural identifiability is an important property of parametric ODE models. When conducting an experiment and inferring the parameter value from the time-series data, we want to know if the value is globally, locally, or non-identifiable.…

离散数学 · 计算机科学 2024-06-25 Natali Gogishvili

We prove identifiability of parameters for a broad class of random graph mixture models. These models are characterized by a partition of the set of graph nodes into latent (unobservable) groups. The connectivities between nodes are…

统计理论 · 数学 2010-06-07 Elizabeth S. Allman , Catherine Matias , John A. Rhodes

Understanding causal relationships among the variables of a system is paramount to explain and control its behavior. For many real-world systems, however, the true causal graph is not readily available and one must resort to predictions…

Knowing when a graphical model is perfect to a distribution is essential in order to relate separation in the graph to conditional independence in the distribution, and this is particularly important when performing inference from data.…

统计理论 · 数学 2019-09-06 Arash A. Amini , Bryon Aragam , Qing Zhou

A mathematical model is identifiable if its parameters can be recovered from data. Here, we focus on a particular class of model, linear compartmental models, which are used to represent the transfer of substances in a system. We analyze…

动力系统 · 数学 2021-06-22 Patrick Chan , Katherine Johnston , Anne Shiu , Aleksandra Sobieska , Clare Spinner

This paper studies the problem of detecting anomalous graphs using a machine learning model trained on only normal graphs, which has many applications in molecule, biology, and social network data analysis. We present a self-discriminative…

机器学习 · 计算机科学 2023-10-11 Jinyu Cai , Yunhe Zhang , Jicong Fan

The criteria for determining graph isomorphism are crucial for solving graph isomorphism problems. The necessary condition is that two isomorphic graphs possess invariants, but their function can only be used to filtrate and subdivide…

图形学 · 计算机科学 2025-08-19 Chuanfu Hu , Aimin Hou

Identifiability is a desirable property of a statistical model: it implies that the true model parameters may be estimated to any desired precision, given sufficient computational resources and data. We study identifiability in the context…

机器学习 · 统计学 2020-07-09 Geoffrey Roeder , Luke Metz , Diederik P. Kingma

Probabilistic graphical models combine the graph theory and probability theory to give a multivariate statistical modeling. They provide a unified description of uncertainty using probability and complexity using the graphical model.…

机器学习 · 统计学 2011-11-30 Yang Zhou

Graphs are fundamental data structures which concisely capture the relational structure in many important real-world domains, such as knowledge graphs, physical and social interactions, language, and chemistry. Here we introduce a powerful…

机器学习 · 计算机科学 2018-03-12 Yujia Li , Oriol Vinyals , Chris Dyer , Razvan Pascanu , Peter Battaglia

This paper considers a challenging problem of identifying a causal graphical model under the presence of latent variables. While various identifiability conditions have been proposed in the literature, they often require multiple pure…

机器学习 · 统计学 2026-02-03 Seunghyun Lee , Yuqi Gu
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