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Dual embodied-symbolic concept representations are the foundation for deep learning and symbolic AI integration. We discuss the use of dual embodied-symbolic concept representations for molecular graph representation learning, specifically…

机器学习 · 计算机科学 2022-05-16 Daniel T. Chang

Graph contrastive learning (GCL) has recently achieved substantial advancements. Existing GCL approaches compare two different ``views'' of the same graph in order to learn node/graph representations. The underlying assumption of these…

机器学习 · 计算机科学 2024-01-18 Gehang Zhang , Bowen Yu , Jiangxia Cao , Xinghua Zhang , Jiawei Sheng , Chuan Zhou , Tingwen Liu

Although an object may appear in numerous contexts, we often describe it in a limited number of ways. Language allows us to abstract away visual variation to represent and communicate concepts. Building on this intuition, we propose an…

计算机视觉与模式识别 · 计算机科学 2023-03-30 Mohamed El Banani , Karan Desai , Justin Johnson

Node representation learning has demonstrated its effectiveness for various applications on graphs. Particularly, recent developments in contrastive learning have led to promising results in unsupervised node representation learning for a…

机器学习 · 计算机科学 2021-06-11 Öykü Deniz Köse , Yanning Shen

Contrastive learning has become pivotal in unsupervised representation learning, with frameworks like Momentum Contrast (MoCo) effectively utilizing large negative sample sets to extract discriminative features. However, traditional…

机器学习 · 计算机科学 2025-01-29 Duy Hoang , Huy Ngo , Khoi Pham , Tri Nguyen , Gia Bao , Huy Phan

Contrastive self-supervised learning has outperformed supervised pretraining on many downstream tasks like segmentation and object detection. However, current methods are still primarily applied to curated datasets like ImageNet. In this…

计算机视觉与模式识别 · 计算机科学 2021-12-15 Wouter Van Gansbeke , Simon Vandenhende , Stamatios Georgoulis , Luc Van Gool

Machine learning for molecules holds great potential for efficiently exploring the vast chemical space and thus streamlining the drug discovery process by facilitating the design of new therapeutic molecules. Deep generative models have…

机器学习 · 计算机科学 2023-07-03 Johanna Sommer , Leon Hetzel , David Lüdke , Fabian Theis , Stephan Günnemann

Graph neural networks are currently leading the performance charts in learning-based molecule property prediction and classification. Computational chemistry has, therefore, become the a prominent testbed for generic graph neural networks,…

机器学习 · 计算机科学 2020-02-04 Eliya Nachmani , Lior Wolf

Deep learning models have become fundamental tools in drug design. In particular, large language models trained on biochemical sequences learn feature vectors that guide drug discovery through virtual screening. However, such models do not…

生物大分子 · 定量生物学 2025-03-28 Joseph D. Clark , Tanner J. Dean , Diwakar Shukla

Low-frequency word prediction remains a challenge in modern neural machine translation (NMT) systems. Recent adaptive training methods promote the output of infrequent words by emphasizing their weights in the overall training objectives.…

计算与语言 · 计算机科学 2021-12-30 Tong Zhang , Wei Ye , Baosong Yang , Long Zhang , Xingzhang Ren , Dayiheng Liu , Jinan Sun , Shikun Zhang , Haibo Zhang , Wen Zhao

Current multimodal models leveraging contrastive learning often face limitations in developing fine-grained conceptual understanding. This is due to random negative samples during pretraining, causing almost exclusively very dissimilar…

计算机视觉与模式识别 · 计算机科学 2024-08-06 Philipp J. Rösch , Norbert Oswald , Michaela Geierhos , Jindřich Libovický

Recent data-efficient molecular generation approaches exploit graph grammars to introduce interpretability into the generative models. However, grammar learning therein relies on expert annotation or unreliable heuristics for algorithmic…

人工智能 · 计算机科学 2025-05-30 Michael Sun , Weize Yuan , Gang Liu , Wojciech Matusik , Jie Chen

Molecular property prediction has gained significant attention due to its transformative potential in multiple scientific disciplines. Conventionally, a molecule graph can be represented either as a graph-structured data or a SMILES text.…

机器学习 · 计算机科学 2023-07-17 Chen Qian , Huayi Tang , Zhirui Yang , Hong Liang , Yong Liu

Modality representation learning is an important problem for multimodal sentiment analysis (MSA), since the highly distinguishable representations can contribute to improving the analysis effect. Previous works of MSA have usually focused…

多媒体 · 计算机科学 2023-01-31 Peipei Liu , Xin Zheng , Hong Li , Jie Liu , Yimo Ren , Hongsong Zhu , Limin Sun

Contrastive learning have been widely used as pretext tasks for self-supervised pre-trained molecular representation learning models in AI-aided drug design and discovery. However, exiting methods that generate molecular views by…

生物大分子 · 定量生物学 2023-03-14 Ziqiao Zhang , Ailin Xie , Jihong Guan , Shuigeng Zhou

Since most scientific literature data are unlabeled, this makes unsupervised graph-based semantic representation learning crucial. Therefore, an unsupervised semantic representation learning method of scientific literature based on graph…

信息检索 · 计算机科学 2023-01-31 Hongrui Gao , Yawen Li , Meiyu Liang , Zeli Guan

Graph representation learning has emerged as a powerful technique for addressing real-world problems. Various downstream graph learning tasks have benefited from its recent developments, such as node classification, similarity search, and…

机器学习 · 计算机科学 2020-07-03 Jiezhong Qiu , Qibin Chen , Yuxiao Dong , Jing Zhang , Hongxia Yang , Ming Ding , Kuansan Wang , Jie Tang

In recent years, molecular graph representation learning (GRL) has drawn much more attention in molecular property prediction (MPP) problems. The existing graph methods have demonstrated that 3D geometric information is significant for…

机器学习 · 计算机科学 2022-12-01 Hao Zhang , Nan Zhang , Ruixin Zhang , Lei Shen , Yingyi Zhang , Meng Liu

Graph representation learning has attracted a surge of interest recently, whose target at learning discriminant embedding for each node in the graph. Most of these representation methods focus on supervised learning and heavily depend on…

机器学习 · 计算机科学 2021-07-07 Pengpeng Shao , Tong Liu , Dawei Zhang , Jianhua Tao , Feihu Che , Guohua Yang

We study the problem of adversarially robust self-supervised learning on graphs. In the contrastive learning framework, we introduce a new method that increases the adversarial robustness of the learned representations through i)…

机器学习 · 计算机科学 2021-02-26 Nikola Jovanović , Zhao Meng , Lukas Faber , Roger Wattenhofer