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相关论文: Extracting Molecular Properties from Natural Langu…

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Natural language processing often involves computations with semantic or syntactic graphs to facilitate sophisticated reasoning based on structural relationships. While convolution kernels provide a powerful tool for comparing graph…

计算与语言 · 计算机科学 2018-02-13 Sahil Garg , Greg Ver Steeg , Aram Galstyan

Natural language is expected to be a key medium for various human-machine interactions in the era of large language models. When it comes to the biochemistry field, a series of tasks around molecules (e.g., property prediction, molecule…

计算与语言 · 计算机科学 2023-06-22 Zheni Zeng , Bangchen Yin , Shipeng Wang , Jiarui Liu , Cheng Yang , Haishen Yao , Xingzhi Sun , Maosong Sun , Guotong Xie , Zhiyuan Liu

This work studies self-supervised graph learning for text-attributed graphs (TAGs) where nodes are represented by textual attributes. Unlike traditional graph contrastive methods that perturb the numerical feature space and alter the…

机器学习 · 计算机科学 2024-06-19 Yi Fang , Dongzhe Fan , Daochen Zha , Qiaoyu Tan

Predicting molecular properties is a critical component of drug discovery. Recent advances in deep learning, particularly Graph Neural Networks (GNNs), have enabled end-to-end learning from molecular structures, reducing reliance on manual…

计算与语言 · 计算机科学 2025-09-26 Peng Zhou , Lai Hou Tim , Zhixiang Cheng , Kun Xie , Chaoyi Li , Wei Liu , Xiangxiang Zeng

Optimizing chemical molecules for desired properties lies at the core of drug development. Despite initial successes made by deep generative models and reinforcement learning methods, these methods were mostly limited by the requirement of…

机器学习 · 计算机科学 2021-12-01 Shuangjia Zheng , Ying Song , Zhang Pan , Chengtao Li , Le Song , Yuedong Yang

Recent advances in Large Language Models (LLMs) have stimulated a surge of research aimed at extending their applications to the visual domain. While these models exhibit promise in generating abstract image captions and facilitating…

计算与语言 · 计算机科学 2023-10-27 Geewook Kim , Hodong Lee , Daehee Kim , Haeji Jung , Sanghee Park , Yoonsik Kim , Sangdoo Yun , Taeho Kil , Bado Lee , Seunghyun Park

Recent advancements in biology and chemistry have leveraged multi-modal learning, integrating molecules and their natural language descriptions to enhance drug discovery. However, current pre-training frameworks are limited to two…

机器学习 · 计算机科学 2025-02-05 Teng Xiao , Chao Cui , Huaisheng Zhu , Vasant G. Honavar

Neural machine translation benefits from semantically rich representations. Considerable progress in learning such representations has been achieved by language modelling and mutual information maximization objectives using contrastive…

Multimodal emotion recognition in conversation (MERC) seeks to identify the speakers' emotions expressed in each utterance, offering significant potential across diverse fields. The challenge of MERC lies in balancing speaker modeling and…

多媒体 · 计算机科学 2025-07-25 Zijian Yi , Ziming Zhao , Zhishu Shen , Tiehua Zhang

In neutrino physics, analyses often depend on large simulated datasets, making it essential for models to generalise effectively to real-world detector data. Contrastive learning, a well-established technique in deep learning, offers a…

高能物理 - 实验 · 物理学 2025-05-23 Alex Wilkinson , Radi Radev , Saul Alonso-Monsalve

Advances in deep learning models have revolutionized the study of biomolecule systems and their mechanisms. Graph representation learning, in particular, is important for accurately capturing the geometric information of biomolecules at…

定量方法 · 定量生物学 2023-04-07 Xinye Xiong , Bingxin Zhou , Yu Guang Wang

Understanding molecular structure and related knowledge is crucial for scientific research. Recent studies integrate molecular graphs with their textual descriptions to enhance molecular representation learning. However, they focus on the…

人工智能 · 计算机科学 2025-06-02 Yibo Li , Yuan Fang , Mengmei Zhang , Chuan Shi

Feature modeling of different modalities is a basic problem in current research of cross-modal information retrieval. Existing models typically project texts and images into one embedding space, in which semantically similar information…

多媒体 · 计算机科学 2019-06-13 Jing Yu , Chenghao Yang , Zengchang Qin , Zhuoqian Yang , Yue Hu , Weifeng Zhang

Foundation models have achieved great success in natural language processing (NLP) and computer vision (CV). Their success largely stems from the ability to integrate multi-domain knowledge in pre-training and transfer it to target domains.…

计算与语言 · 计算机科学 2025-07-01 Zihao Zhao , Xinlong Zhai , Jinyu Yang , Chuan Shi

Although the self-supervised pre-training of transformer models has resulted in the revolutionizing of natural language processing (NLP) applications and the achievement of state-of-the-art results with regard to various benchmarks, this…

计算与语言 · 计算机科学 2023-01-26 Xiang Chen , Xin Xie , Zhen Bi , Hongbin Ye , Shumin Deng , Ningyu Zhang , Huajun Chen

Image-based profiling techniques have become increasingly popular over the past decade for their applications in target identification, mechanism-of-action inference, and assay development. These techniques have generated large datasets of…

生物大分子 · 定量生物学 2023-06-28 Cuong Q. Nguyen , Dante Pertusi , Kim M. Branson

The recent advent of self-supervised pre-training techniques has led to a surge in the use of multimodal learning in form document understanding. However, existing approaches that extend the mask language modeling to other modalities…

Graph contrastive learning is a general learning paradigm excelling at capturing invariant information from diverse perturbations in graphs. Recent works focus on exploring the structural rationale from graphs, thereby increasing the…

机器学习 · 计算机科学 2024-04-09 Qirui Ji , Jiangmeng Li , Jie Hu , Rui Wang , Changwen Zheng , Fanjiang Xu

The integration of different imaging modalities, such as structural, diffusion tensor, and functional magnetic resonance imaging, with deep learning models has yielded promising outcomes in discerning phenotypic characteristics and…

图像与视频处理 · 电气工程与系统科学 2024-10-08 Zhiyuan Li , Hailong Li , Anca L. Ralescu , Jonathan R. Dillman , Mekibib Altaye , Kim M. Cecil , Nehal A. Parikh , Lili He

Predictive coding is a message-passing framework initially developed to model information processing in the brain, and now also topic of research in machine learning due to some interesting properties. One of such properties is the natural…

机器学习 · 计算机科学 2022-12-12 Billy Byiringiro , Tommaso Salvatori , Thomas Lukasiewicz