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Recognizing specific events in medical data requires trained personnel. To aid the classification, machine learning algorithms can be applied. In this context, medical records are usually high-dimensional, although a lower dimension can…

信号处理 · 电气工程与系统科学 2025-02-19 Annika Stiehl , Stefan Geißelsöder , Nicole Ille , Fabienne Anselstetter , Harald Bornfleth , Christian Uhl

Appropriately representing elements in a database so that queries may be accurately matched is a central task in information retrieval; recently, this has been achieved by embedding the graphical structure of the database into a manifold in…

机器学习 · 统计学 2023-07-10 Yueqi Cao , Athanasios Vlontzos , Luca Schmidtke , Bernhard Kainz , Anthea Monod

We propose a method for learning topology-preserving data representations (dimensionality reduction). The method aims to provide topological similarity between the data manifold and its latent representation via enforcing the similarity in…

Dimensionality reduction is an integral part of data visualization. It is a process that obtains a structure preserving low-dimensional representation of the high-dimensional data. Two common criteria can be used to achieve a dimensionality…

计算几何 · 计算机科学 2018-06-25 Lin Yan , Yaodong Zhao , Paul Rosen , Carlos Scheidegger , Bei Wang

We show that recent results on randomized dimension reduction schemes that exploit structural properties of data can be applied in the context of persistent homology. In the spirit of compressed sensing, the dimension reduction is…

计算几何 · 计算机科学 2019-09-09 Martin Lotz

Dimensionality reduction techniques are powerful tools for data preprocessing and visualization which typically come with few guarantees concerning the topological correctness of an embedding. The interleaving distance between the…

机器学习 · 计算机科学 2022-02-01 Bradley J. Nelson , Yuan Luo

In this work we test Wasserstein distance in conjunction with persistent homology, as a tool for discriminating large scale structures of simulated universes with different values of $\sigma_8$ cosmological parameter (present…

宇宙学与河外天体物理 · 物理学 2023-05-11 Maksym Tsizh , Vitalii Tymchyshyn , Franco Vazza

This paper presents a generalization of the Wasserstein distance for both persistence diagrams and merge trees [20], [66] that takes advantage of the regions of their topological features in the input domain. Specifically, we redefine the…

图形学 · 计算机科学 2025-10-21 Mathieu Pont , Christoph Garth

Topological methods can provide a way of proposing new metrics and methods of scrutinising data, that otherwise may be overlooked. In this work, a method of quantifying the shape of data, via a topic called topological data analysis will be…

机器学习 · 统计学 2022-09-25 Tristan Gowdridge , Nikolaos Dervilis , Keith Worden

Single-parameter persistent homology, a key tool in topological data analysis, has been widely applied to data problems along with statistical techniques that quantify the significance of the results. In contrast, statistical techniques for…

代数拓扑 · 数学 2020-12-14 Matthew Wright , Xiaojun Zheng

In recent years, topological data analysis has been utilized for a wide range of problems to deal with high dimensional noisy data. While text representations are often high dimensional and noisy, there are only a few work on the…

机器学习 · 计算机科学 2020-04-21 Shafie Gholizadeh , Armin Seyeditabari , Wlodek Zadrozny

Topological Data Analysis (TDA) is an approach to handle with big data by studying its shape. A main tool of TDA is the persistence diagram, and one can use it to compare data sets. One approach to learn on the similarity between two…

应用统计 · 统计学 2020-03-04 Sarit Agami

Persistent homology offers a powerful tool for extracting hidden topological signals from brain networks. It captures the evolution of topological structures across multiple scales, known as filtrations, thereby revealing topological…

Persistence diagrams (PD)s play a central role in topological data analysis, and are used in an ever increasing variety of applications. The comparison of PD data requires computing comparison metrics among large sets of PDs, with metrics…

计算几何 · 计算机科学 2024-02-23 Rolando Kindelan Nuñez , Mircea Petrache , Mauricio Cerda , Nancy Hitschfeld

We introduce a linear dimensionality reduction technique preserving topological features via persistent homology. The method is designed to find linear projection $L$ which preserves the persistent diagram of a point cloud $\mathbb{X}$ via…

机器学习 · 统计学 2021-06-15 Byeongsu Yu , Kisung You

Dimension reduction (DR) methods provide systematic approaches for analyzing high-dimensional data. A key requirement for DR is to incorporate global dependencies among original and embedded samples while preserving clusters in the…

机器学习 · 统计学 2023-03-10 Antoine Collas , Titouan Vayer , Rémi Flamary , Arnaud Breloy

It is a standard assumption that datasets in high dimension have an internal structure which means that they in fact lie on, or near, subsets of a lower dimension. In many instances it is important to understand the real dimension of the…

机器学习 · 统计学 2025-07-21 James A. D. Binnie , Paweł Dłotko , John Harvey , Jakub Malinowski , Ka Man Yim

Persistent homology is a popular computational tool for analyzing the topology of point clouds, such as the presence of loops or voids. However, many real-world datasets with low intrinsic dimensionality reside in an ambient space of much…

机器学习 · 计算机科学 2024-11-01 Sebastian Damrich , Philipp Berens , Dmitry Kobak

We introduce a construction and an algorithm, both based on Topological Data Analysis (TDA), to tackle the problem of the isomorphism check of Orthogonal Arrays (OAs). Specifically, we associate to any binary OA a persistence diagram, one…

统计计算 · 统计学 2024-10-01 Roberto Fontana , Marco Guerra

Topological data analysis is becoming increasingly relevant to support the analysis of unstructured data sets. A common assumption in data analysis is that the data set is a sample---not necessarily a uniform one---of some high-dimensional…

代数拓扑 · 数学 2021-01-20 Bastian Rieck , Markus Banagl , Filip Sadlo , Heike Leitte
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