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We introduce DNABERT-S, a tailored genome model that develops species-aware embeddings to naturally cluster and segregate DNA sequences of different species in the embedding space. Differentiating species from genomic sequences (i.e., DNA…

基因组学 · 定量生物学 2024-10-23 Zhihan Zhou , Weimin Wu , Harrison Ho , Jiayi Wang , Lizhen Shi , Ramana V Davuluri , Zhong Wang , Han Liu

We present a novel coupled two-way clustering approach to gene microarray data analysis. The main idea is to identify subsets of the genes and samples, such that when one of these is used to cluster the other, stable and significant…

生物物理 · 物理学 2009-11-06 G. Getz , E. Levine , E. Domany

Tracking all nuclei of an embryo in noisy and dense fluorescence microscopy data is a challenging task. We build upon a recent method for nuclei tracking that combines weakly-supervised learning from a small set of nuclei center point…

计算机视觉与模式识别 · 计算机科学 2022-08-25 Peter Hirsch , Caroline Malin-Mayor , Anthony Santella , Stephan Preibisch , Dagmar Kainmueller , Jan Funke

Insect pests continue to bring a serious threat to crop yields around the world, and traditional methods for monitoring them are often slow, manual, and difficult to scale. In recent years, deep learning has emerged as a powerful solution,…

计算机视觉与模式识别 · 计算机科学 2025-08-11 Muhammad Hassam Ejaz , Muhammad Bilal , Usman Habib , Muhammad Attique , Tae-Sun Chung

This is a photographic dataset collected for testing image processing algorithms. The idea is to have sets of different but statistically similar images. In this work the images show randomly distributed peppercorns. The dataset is made…

数据分析、统计与概率 · 物理学 2016-03-04 Teemu Helenius , Samuli Siltanen

Recent advances in deep learning have enabled the development of automated frameworks for analysing medical images and signals, including analysis of cervical cancer. Many previous works focus on the analysis of isolated cervical cells, or…

计算机视觉与模式识别 · 计算机科学 2024-03-06 Ruiqi Wang , Mohammad Ali Armin , Simon Denman , Lars Petersson , David Ahmedt-Aristizabal

This paper proposes a novel selective autoencoder approach within the framework of deep convolutional networks. The crux of the idea is to train a deep convolutional autoencoder to suppress undesired parts of an image frame while allowing…

Remote individual animal identification is important for food safety, sport, and animal conservation. Numerous existing remote individual animal identification studies have focused on RGB images. In this paper, we tackle individual penguin…

计算机视觉与模式识别 · 计算机科学 2024-05-24 Youta Noboru , Yuko Ozasa , Masayuki Tanaka

An original dataset for semantic segmentation, Ciona17, is introduced, which to the best of the authors' knowledge, is the first dataset of its kind with pixel-level annotations pertaining to invasive species in a marine environment.…

计算机视觉与模式识别 · 计算机科学 2017-02-21 Angus Galloway , Graham W. Taylor , Aaron Ramsay , Medhat Moussa

In today world of enormous amounts of data, it is very important to extract useful knowledge from it. This can be accomplished by feature subset selection. Feature subset selection is a method of selecting a minimum number of features with…

机器学习 · 计算机科学 2019-07-16 Agnip Dasgupta , Ardhendu Banerjee , Aniket Ghosh Dastidar , Antara Barman , Sanjay Chakraborty

The development of deep segmentation models for computational pathology (CPath) can help foster the investigation of interpretable morphological biomarkers. Yet, there is a major bottleneck in the success of such approaches because…

The D-Egg, an acronym for ``Dual optical sensors in an Ellipsoid Glass for Gen2,'' is one of the optical modules designed for future extensions of the IceCube experiment at the South Pole. The D-Egg has an elongated-sphere shape to maximize…

天体物理仪器与方法 · 物理学 2023-04-26 R. Abbasi , M. Ackermann , J. Adams , N. Aggarwal , J. A. Aguilar , M. Ahlers , J. M. Alameddine , A. A. Alves , N. M. Amin , K. Andeen , T. Anderson , G. Anton , C. Argüelles , Y. Ashida , S. Athanasiadou , S. N. Axani , X. Bai , A. Balagopal V. , M. Baricevic , S. W. Barwick , V. Basu , R. Bay , J. J. Beatty , K. -H. Becker , J. Becker Tjus , J. Beise , C. Bellenghi , S. BenZvi , D. Berley , E. Bernardini , D. Z. Besson , G. Binder , D. Bindig , E. Blaufuss , S. Blot , F. Bontempo , J. Y. Book , J. Borowka , C. Boscolo Meneguolo , S. Böser , O. Botner , J. Böttcher , E. Bourbeau , J. Braun , B. Brinson , J. Brostean-Kaiser , R. T. Burley , R. S. Busse , M. A. Campana , K. Carloni , E. G. Carnie-Bronca , C. Chen , Z. Chen , D. Chirkin , S. Choi , B. A. Clark , L. Classen , A. Coleman , G. H. Collin , A. Connolly , J. M. Conrad , P. Coppin , P. Correa , S. Countryman , D. F. Cowen , C. Dappen , P. Dave , C. De Clercq , J. J. DeLaunay , D. Delgado López , H. Dembinski , K. Deoskar , A. Desai , P. Desiati , K. D. de Vries , G. de Wasseige , T. DeYoung , A. Diaz , J. C. Díaz-Vélez , M. Dittmer , A. Domi , H. Dujmovic , M. A. DuVernois , T. Ehrhardt , P. Eller , R. Engel , H. Erpenbeck , J. Evans , P. A. Evenson , K. L. Fan , A. R. Fazely , A. Fedynitch , N. Feigl , S. Fiedlschuster , A. T. Fienberg , C. Finley , L. Fischer , D. Fox , A. Franckowiak , E. Friedman , A. Fritz , P. Fürst , T. K. Gaisser , J. Gallagher , E. Ganster , A. Garcia , S. Garrappa , L. Gerhardt , A. Ghadimi , C. Glaser , T. Glauch , T. Glüsenkamp , N. Goehlke , J. G. Gonzalez , S. Goswami , D. Grant , S. J. Gray , T. Grégoire , S. Griffin , S. Griswold , C. Günther , P. Gutjahr , C. Haack , A. Hallgren , R. Halliday , L. Halve , F. Halzen , H. Hamdaoui , M. Ha Minh , K. Hanson , J. Hardin , A. A. Harnisch , P. Hatch , A. Haungs , K. Helbing , J. Hellrung , F. Henningsen , L. Heuermann , S. Hickford , A. Hidvegi , C. Hill , G. C. Hill , K. D. Hoffman , K. Hoshina , W. Hou , T. Huber , K. Hultqvist , M. Hünnefeld , R. Hussain , K. Hymon , S. In , N. Iovine , A. Ishihara , M. Jansson , G. S. Japaridze , M. Jeong , M. Jin , B. J. P. Jones , D. Kang , W. Kang , X. Kang , A. Kappes , D. Kappesser , L. Kardum , T. Karg , M. Karl , A. Karle , U. Katz , M. Kauer , J. L. Kelley , A. Kheirandish , K. Kin , J. Kiryluk , S. R. Klein , A. Kochocki , R. Koirala , H. Kolanoski , T. Kontrimas , L. Köpke , C. Kopper , D. J. Koskinen , P. Koundal , M. Kovacevich , M. Kowalski , T. Kozynets , K. Kruiswijk , E. Krupczak , A. Kumar , E. Kun , N. Kurahashi , N. Lad , C. Lagunas Gualda , M. Lamoureux , M. J. Larson , F. Lauber , J. P. Lazar , J. W. Lee , K. Leonard DeHolton , A. Leszczyńska , M. Lincetto , Q. R. Liu , M. Liubarska , E. Lohfink , C. Love , C. J. Lozano Mariscal , L. Lu , F. Lucarelli , A. Ludwig , W. Luszczak , Y. Lyu , W. Y. Ma , J. Madsen , K. B. M. Mahn , Y. Makino , S. Mancina , W. Marie Sainte , I. C. Mariş , S. Marka , Z. Marka , M. Marsee , I. Martinez-Soler , R. Maruyama , F. Mayhew , T. McElroy , F. McNally , J. V. Mead , K. Meagher , S. Mechbal , A. Medina , M. Meier , S. Meighen-Berger , Y. Merckx , L. Merten , T. Meures , J. Micallef , D. Mockler , T. Montaruli , R. W. Moore , Y. Morii , R. Morse , M. Moulai , T. Mukherjee , R. Naab , R. Nagai , U. Naumann , J. Necker , M. Neumann , H. Niederhausen , M. U. Nisa , A. Noell , S. C. Nowicki , A. Obertacke Pollmann , M. Oehler , B. Oeyen , A. Olivas , R. Orsoe , J. Osborn , E. O'Sullivan , H. Pandya , D. V. Pankova , N. Park , G. K. Parker , E. N. Paudel , L. Paul , C. Pérez de los Heros , J. Peterson , S. Philippen , S. Pieper , A. Pizzuto , M. Plum , Y. Popovych , M. Prado Rodriguez , B. Pries , R. Procter-Murphy , G. T. Przybylski , C. Raab , J. Rack-Helleis , K. Rawlins , Z. Rechav , A. Rehman , P. Reichherzer , G. Renzi , E. Resconi , S. Reusch , W. Rhode , M. Richman , B. Riedel , E. J. Roberts , S. Robertson , S. Rodan , G. Roellinghoff , M. Rongen , C. Rott , T. Ruhe , L. Ruohan , D. Ryckbosch , S. Athanasiadou , I. Safa , J. Saffer , D. Salazar-Gallegos , P. Sampathkumar , S. E. Sanchez Herrera , A. Sandrock , P. Sandstrom , M. Santander , S. Sarkar , S. Sarkar , J. Savelberg , P. Savina , M. Schaufel , H. Schieler , S. Schindler , B. Schlüter , T. Schmidt , J. Schneider , F. G. Schröder , L. Schumacher , G. Schwefer , S. Sclafani , D. Seckel , S. Seunarine , A. Sharma , S. Shefali , N. Shimizu , S. Shimizu , M. Silva , B. Skrzypek , B. Smithers , R. Snihur , J. Soedingrekso , A. Søgaard , D. Soldin , C. Spannfellner , G. M. Spiczak , C. Spiering , M. Stamatikos , T. Stanev , R. Stein , T. Stezelberger , T. Stürwald , T. Stuttard , G. W. Sullivan , I. Taboada , S. Ter-Antonyan , W. G. Thompson , J. Thwaites , S. Tilav , K. Tollefson , C. Tönnis , S. Toscano , D. Tosi , A. Trettin , C. F. Tung , R. Turcotte , J. P. Twagirayezu , B. Ty , M. A. Unland Elorrieta , K. Upshaw , N. Valtonen-Mattila , J. Vandenbroucke , N. van Eijndhoven , D. Vannerom , J. van Santen , J. Vara , J. Veitch-Michaelis , S. Verpoest , D. Veske , C. Walck , T. B. Watson , C. Weaver , J. Weber , P. Weigel , A. Weindl , J. Weldert , C. Wendt , J. Werthebach , M. Weyrauch , N. Whitehorn , C. H. Wiebusch , N. Willey , D. R. Williams , I. Wisher , M. Wolf , G. Wrede , J. Wulff , X. W. Xu , J. P. Yanez , E. Yildizci , S. Yoshida , F. Yu , S. Yu , T. Yuan , Z. Zhang , P. Zhelnin

The task of clustering a set of objects based on multiple sources of data arises in several modern applications. We propose an integrative statistical model that permits a separate clustering of the objects for each data source. These…

机器学习 · 统计学 2015-12-01 Eric F. Lock , David B. Dunson

This research recasts the network attack dataset from UNSW-NB15 as an intrusion detection problem in image space. Using one-hot-encodings, the resulting grayscale thumbnails provide a quarter-million examples for deep learning algorithms.…

密码学与安全 · 计算机科学 2021-03-16 David A. Noever , Samantha E. Miller Noever

Individual identification plays a pivotal role in ecology and ethology, notably as a tool for complex social structures understanding. However, traditional identification methods often involve invasive physical tags and can prove both…

计算机视觉与模式识别 · 计算机科学 2023-10-11 Julien Paulet , Axel Molina , Benjamin Beltzung , Takafumi Suzumura , Shinya Yamamoto , Cédric Sueur

The early identification of diseases in cocoa pods is an important task to guarantee the production of high-quality cocoa. The use of artificial intelligence techniques such as machine learning, computer vision and deep learning are…

计算机视觉与模式识别 · 计算机科学 2024-01-03 Darlyn Buenaño Vera , Byron Oviedo , Washington Chiriboga Casanova , Cristian Zambrano-Vega

Catching objects in-flight is an outstanding challenge in robotics. In this paper, we present a closed-loop control system fusing data from two sensor modalities: an RGB-D camera and a radar. To develop and test our method, we start with an…

机器人学 · 计算机科学 2020-01-29 Ozan Çatal , Lawrence De Mol , Tim Verbelen , Bart Dhoedt

Cervical cancer, the fourth leading cause of cancer in women globally, requires early detection through Pap smear tests to identify precancerous changes and prevent disease progression. In this study, we performed a focused analysis by…

图像与视频处理 · 电气工程与系统科学 2025-05-22 Abdul Samad Shaik , Shashaank Mattur Aswatha , Rahul Jashvantbhai Pandya

Deep learning models are prone to learning shortcut solutions to problems using spuriously correlated yet irrelevant features of their training data. In high-risk applications such as medical image analysis, this phenomenon may prevent…

计算机视觉与模式识别 · 计算机科学 2025-11-25 Christopher Boland , Sotirios Tsaftaris , Sonia Dahdouh

With Polycystic Kidney Disease (PKD) potentially leading to fatal complications in patients due to the formation of cysts in kidneys, early detection of PKD is crucial for effective management of the condition. However, the various…

机器学习 · 计算机科学 2023-09-26 Kapil Panda , Anirudh Mazumder