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TSNE and UMAP are two of the most popular dimensionality reduction algorithms due to their speed and interpretable low-dimensional embeddings. However, while attempts have been made to improve on TSNE's computational complexity, no existing…

Neighbor embedding methods $t$-SNE and UMAP are the de facto standard for visualizing high-dimensional datasets. Motivated from entirely different viewpoints, their loss functions appear to be unrelated. In practice, they yield strongly…

机器学习 · 计算机科学 2024-06-06 Sebastian Damrich , Jan Niklas Böhm , Fred A. Hamprecht , Dmitry Kobak

Dimensionality reduction methods such as t-SNE and UMAP are popular methods for visualizing data with a potential (latent) clustered structure. They are known to group data points at the same time as they embed them, resulting in…

机器学习 · 计算机科学 2025-09-04 Elizabeth Coda , Ery Arias-Castro , Gal Mishne

Low-dimensional embeddings and visualizations are an indispensable tool for analysis of high-dimensional data. State-of-the-art methods, such as tSNE and UMAP, excel in unveiling local structures hidden in high-dimensional data and are…

机器学习 · 计算机科学 2023-02-01 Jonas Fischer , Rebekka Burkholz , Jilles Vreeken

UMAP (Uniform Manifold Approximation and Projection) is a novel manifold learning technique for dimension reduction. UMAP is constructed from a theoretical framework based in Riemannian geometry and algebraic topology. The result is a…

机器学习 · 统计学 2020-09-21 Leland McInnes , John Healy , James Melville

Uniform Manifold Approximation and Projection (UMAP) is a widely used manifold learning technique for dimensionality reduction. This paper studies UMAP, supervised UMAP, and several competing dimensionality reduction methods, including…

机器学习 · 计算机科学 2026-05-04 Guanzhe Zhang , Shanshan Ding , Zhezhen Jin

Different unsupervised models for dimensionality reduction like PCA, LLE, Shannon's mapping, tSNE, UMAP, etc. work on different principles, hence, they are difficult to compare on the same ground. Although they are usually good for…

统计方法学 · 统计学 2024-05-10 Subhrajyoty Roy

It has become standard to use gradient-based dimensionality reduction (DR) methods like tSNE and UMAP when explaining what AI models have learned. This makes sense: these methods are fast, robust, and have an uncanny ability to find…

机器学习 · 计算机科学 2024-06-17 Andrew Draganov , Simon Dohn

UMAP has supplanted t-SNE as state-of-the-art for visualizing high-dimensional datasets in many disciplines, but the reason for its success is not well understood. In this work, we investigate UMAP's sampling based optimization scheme in…

机器学习 · 计算机科学 2021-04-23 Sebastian Damrich , Fred A. Hamprecht

Uniform Manifold Approximation and Projection (UMAP) is one of the state-of-the-art methods for dimensionality reduction and data visualization. This is a tutorial and survey paper on UMAP and its variants. We start with UMAP algorithm…

人机交互 · 计算机科学 2021-09-07 Benyamin Ghojogh , Ali Ghodsi , Fakhri Karray , Mark Crowley

Misuses of t-SNE and UMAP in visual analytics have become increasingly common. For example, although t-SNE and UMAP projections often do not faithfully reflect the original distances between clusters, practitioners frequently use them to…

人机交互 · 计算机科学 2025-10-02 Hyeon Jeon , Jeongin Park , Sungbok Shin , Jinwook Seo

Neighbor embeddings are a family of methods for visualizing complex high-dimensional datasets using $k$NN graphs. To find the low-dimensional embedding, these algorithms combine an attractive force between neighboring pairs of points with a…

机器学习 · 计算机科学 2024-06-06 Jan Niklas Böhm , Philipp Berens , Dmitry Kobak

$t$-SNE is an embedding method that the data science community has widely Two interesting characteristics of t-SNE are the structure preservation property and the answer to the crowding problem, where all neighbors in high dimensional space…

机器学习 · 计算机科学 2021-09-23 Gaëlle Candel , David Naccache

Topology based dimensionality reduction methods such as t-SNE and UMAP have seen increasing success and popularity in high-dimensional data. These methods have strong mathematical foundations and are based on the intuition that the topology…

人工智能 · 计算机科学 2021-12-17 Ayush Dalmia , Suzanna Sia

Nowadays, as data becomes increasingly complex and distributed, data analyses often involve several related datasets that are stored on different servers and probably owned by different stakeholders. While there is an emerging need to…

密码学与安全 · 计算机科学 2020-07-31 Jiazhi Xia , Tianxiang Chen , Lei Zhang , Wei Chen , Yang Chen , Xiaolong Zhang , Cong Xie , Tobias Schreck

The clustering and visualisation of high-dimensional data is a ubiquitous task in modern data science. Popular techniques include nonlinear dimensionality reduction methods like t-SNE or UMAP. These methods face the `scale-problem' of…

机器学习 · 统计学 2025-10-20 Jack Kendrick

High-dimensional data visualization is crucial in the big data era and these techniques such as t-SNE and UMAP have been widely used in science and engineering. Big data, however, is often distributed across multiple data centers and…

机器学习 · 计算机科学 2024-12-19 Dong Qiao , Xinxian Ma , Jicong Fan

Running machine learning analytics over geographically distributed datasets is a rapidly arising problem in the world of data management policies ensuring privacy and data security. Visualizing high dimensional data using tools such as…

分布式、并行与集群计算 · 计算机科学 2020-11-13 Viska Wei , Nikita Ivkin , Vladimir Braverman , Alexander Szalay

Dimensionality reduction methods such as UMAP and t-SNE are central tools for visualising high-dimensional data, but their local-neighborhood objectives can preserve sampling noise while distorting global topology. We show that standard…

机器学习 · 计算机科学 2026-04-30 Alexander Kolpakov , Igor Rivin

Neighbour embeddings (NE) allow the representation of high dimensional datasets into lower dimensional spaces and are often used in data visualisation. In practice, accelerated approximations are employed to handle very large datasets.…

机器学习 · 计算机科学 2025-09-10 Pierre Lambert , Edouard Couplet , Michel Verleysen , John Aldo Lee
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