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Most state-of-the-art instance segmentation methods have to be trained on densely annotated images. While difficult in general, this requirement is especially daunting for biomedical images, where domain expertise is often required for…

计算机视觉与模式识别 · 计算机科学 2022-04-05 Adrian Wolny , Qin Yu , Constantin Pape , Anna Kreshuk

State-of-the-art (SOTA) methods for cell instance segmentation are based on deep learning (DL) semantic segmentation approaches, focusing on distinguishing foreground pixels from background pixels. In order to identify cell instances from…

计算机视觉与模式识别 · 计算机科学 2025-10-14 Peixian Liang , Yifan Ding , Yizhe Zhang , Jianxu Chen , Hao Zheng , Hongxiao Wang , Yejia Zhang , Guangyu Meng , Tim Weninger , Michael Niemier , X. Sharon Hu , Danny Z Chen

Instance-level image classification tasks have traditionally relied on single-instance labels to train models, e.g., few-shot learning and transfer learning. However, set-level coarse-grained labels that capture relationships among…

机器学习 · 计算机科学 2023-11-21 Renyu Zhang , Aly A. Khan , Yuxin Chen , Robert L. Grossman

We propose an approach to instance-level image segmentation that is built on top of category-level segmentation. Specifically, for each pixel in a semantic category mask, its corresponding instance bounding box is predicted using a deep…

计算机视觉与模式识别 · 计算机科学 2016-05-24 Zifeng Wu , Chunhua Shen , Anton van den Hengel

Medical imaging segmentation is a highly active area of research, with deep learning-based methods achieving state-of-the-art results in several benchmarks. However, the lack of standardized tools for training, testing, and evaluating new…

图像与视频处理 · 电气工程与系统科学 2024-11-19 Adrian Celaya , Evan Lim , Rachel Glenn , Brayden Mi , Alex Balsells , Dawid Schellingerhout , Tucker Netherton , Caroline Chung , Beatrice Riviere , David Fuentes

We introduce CellSegmenter, a structured deep generative model and an amortized inference framework for unsupervised representation learning and instance segmentation tasks. The proposed inference algorithm is convolutional and…

计算机视觉与模式识别 · 计算机科学 2020-11-26 Luca D'Alessio , Mehrtash Babadi

Automated fish documentation processes are in the near future expected to play an essential role in sustainable fisheries management and for addressing challenges of overfishing. In this paper, we present a novel and publicly available…

计算机视觉与模式识别 · 计算机科学 2025-01-08 Stefan Hein Bengtson , Daniel Lehotský , Vasiliki Ismiroglou , Niels Madsen , Thomas B. Moeslund , Malte Pedersen

Semantic segmentation of microscopic cell images using deep learning is an important technique, however, it requires a large number of images and ground truth labels for training. To address the above problem, we consider an efficient…

计算机视觉与模式识别 · 计算机科学 2023-04-18 Sota Kato , Kazuhiro Hotta

Fine-grained ship instance segmentation in satellite images holds considerable significance for monitoring maritime activities at sea. However, existing datasets often suffer from the scarcity of fine-grained information or pixel-wise…

计算机视觉与模式识别 · 计算机科学 2024-02-07 Pengming Feng , Mingjie Xie , Hongning Liu , Xuanjia Zhao , Guangjun He , Xueliang Zhang , Jian Guan

Every year millions of people die due to disease of Cancer. Due to its invasive nature it is very complex to cure even in primary stages. Hence, only method to survive this disease completely is via forecasting by analyzing the early…

计算机视觉与模式识别 · 计算机科学 2018-08-24 Shivam Singh , Stuti Pathak

Panoptic segmentation assigns semantic and instance ID labels to every pixel of an image. As permutations of instance IDs are also valid solutions, the task requires learning of high-dimensional one-to-many mapping. As a result,…

计算机视觉与模式识别 · 计算机科学 2023-10-16 Ting Chen , Lala Li , Saurabh Saxena , Geoffrey Hinton , David J. Fleet

Cell microscopy data are abundant; however, corresponding segmentation annotations remain scarce. Moreover, variations in cell types, imaging devices, and staining techniques introduce significant domain gaps between datasets. As a result,…

机器学习 · 计算机科学 2026-01-27 Rüveyda Yilmaz , Zhu Chen , Yuli Wu , Johannes Stegmaier

In this paper, we propose a new model to segment cells in phase contrast microscopy images. Cell images collected from the similar scenario share a similar background. Inspired by this, we separate cells from the background in images by…

计算机视觉与模式识别 · 计算机科学 2019-04-02 Lin Zhang

Cancer diseases constitute one of the most significant societal challenges. In this paper, we introduce a novel histopathological dataset for prostate cancer detection. The proposed dataset, consisting of over 2.6 million tissue patches…

Background: The quantitative analysis of microscope videos often requires instance segmentation and tracking of cellular and subcellular objects. The traditional method consists of two stages: (1) performing instance object segmentation of…

图像与视频处理 · 电气工程与系统科学 2021-05-25 Quan Liu , Isabella M. Gaeta , Mengyang Zhao , Ruining Deng , Aadarsh Jha , Bryan A. Millis , Anita Mahadevan-Jansen , Matthew J. Tyska , Yuankai Huo

Quantitative measurement of crystals in high-resolution images allows for important insights into underlying material characteristics. Deep learning has shown great progress in vision-based automatic crystal size measurement, but current…

Segmenting an object in a video presents significant challenges. Each pixel must be accurately labelled, and these labels must remain consistent across frames. The difficulty increases when the segmentation is with arbitrary granularity,…

计算机视觉与模式识别 · 计算机科学 2025-02-20 Amirhossein Alimohammadi , Sauradip Nag , Saeid Asgari Taghanaki , Andrea Tagliasacchi , Ghassan Hamarneh , Ali Mahdavi Amiri

The accurate segmentation and tracking of cells in microscopy image sequences is an important task in biomedical research, e.g., for studying the development of tissues, organs or entire organisms. However, the segmentation of touching…

计算机视觉与模式识别 · 计算机科学 2020-12-10 Tim Scherr , Katharina Löffler , Moritz Böhland , Ralf Mikut

Segmentation of objects in microscopy images is required for many biomedical applications. We introduce object-centric embeddings (OCEs), which embed image patches such that the spatial offsets between patches cropped from the same object…

机器学习 · 计算机科学 2023-10-13 Steffen Wolf , Manan Lalit , Henry Westmacott , Katie McDole , Jan Funke

Instance segmentation is essential for numerous computer vision applications, including robotics, human-computer interaction, and autonomous driving. Currently, popular models bring impressive performance in instance segmentation by…

计算机视觉与模式识别 · 计算机科学 2025-09-09 Cuong Manh Hoang