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The spread of microbial infections is governed by the self-organization of bacteria on surfaces. Limitations of live imaging techniques make collective behaviors in clinically relevant systems challenging to quantify. Here, novel…

生物物理 · 物理学 2024-07-19 Vincent Hickl , Abid Khan , René M. Rossi , Bruno F. B. Silva , Katharina Maniura-Weber

We present a new annotated microscopic cellular image dataset to improve the effectiveness of machine learning methods for cellular image analysis. Cell counting is an important step in cell analysis. Typically, domain experts manually…

图像与视频处理 · 电气工程与系统科学 2024-11-20 Abdurahman Ali Mohammed , Catherine Fonder , Donald S. Sakaguchi , Wallapak Tavanapong , Surya K. Mallapragada , Azeez Idris

Instance segmentation of neurons in volumetric light microscopy images of nervous systems enables groundbreaking research in neuroscience by facilitating joint functional and morphological analyses of neural circuits at cellular resolution.…

计算机视觉与模式识别 · 计算机科学 2024-04-02 Lisa Mais , Peter Hirsch , Claire Managan , Ramya Kandarpa , Josef Lorenz Rumberger , Annika Reinke , Lena Maier-Hein , Gudrun Ihrke , Dagmar Kainmueller

Instance segmentation is a computer vision task where separate objects in an image are detected and segmented. State-of-the-art deep neural network models require large amounts of labeled data in order to perform well in this task. Making…

计算机视觉与模式识别 · 计算机科学 2022-02-21 Tuomas Sormunen , Arttu Lämsä , Miguel Bordallo Lopez

Objective: A new image instance segmentation method is proposed to segment individual glands (instances) in colon histology images. This process is challenging since the glands not only need to be segmented from a complex background, they…

计算机视觉与模式识别 · 计算机科学 2017-11-27 Yan Xu , Yang Li , Yipei Wang , Mingyuan Liu , Yubo Fan , Maode Lai , Eric I-Chao Chang

In this article, we present a new unique dataset for dental research - AlphaDent. This dataset is based on the DSLR camera photographs of the teeth of 295 patients and contains over 1200 images. The dataset is labeled for solving the…

The need for labour intensive pixel-wise annotation is a major limitation of many fully supervised learning methods for segmenting bioimages that can contain numerous object instances with thin separations. In this paper, we introduce a…

计算机视觉与模式识别 · 计算机科学 2020-09-11 Rihuan Ke , Aurélie Bugeau , Nicolas Papadakis , Peter Schuetz , Carola-Bibiane Schönlieb

Two of the most common tasks in medical imaging are classification and segmentation. Either task requires labeled data annotated by experts, which is scarce and expensive to collect. Annotating data for segmentation is generally considered…

计算机视觉与模式识别 · 计算机科学 2020-12-01 Ozan Ciga , Anne L. Martel

We present a new, embarrassingly simple approach to instance segmentation in images. Compared to many other dense prediction tasks, e.g., semantic segmentation, it is the arbitrary number of instances that have made instance segmentation…

计算机视觉与模式识别 · 计算机科学 2020-07-21 Xinlong Wang , Tao Kong , Chunhua Shen , Yuning Jiang , Lei Li

Segmentation of anatomical structures and pathologies is inherently ambiguous. For instance, structure borders may not be clearly visible or different experts may have different styles of annotating. The majority of current state-of-the-art…

Object detection or localization is an incremental step in progression from coarse to fine digital image inference. It not only provides the classes of the image objects, but also provides the location of the image objects which have been…

计算机视觉与模式识别 · 计算机科学 2020-07-07 Abdul Mueed Hafiz , Ghulam Mohiuddin Bhat

Cell segmentation is a fundamental task in microscopy image analysis. Several foundation models for cell segmentation have been introduced, virtually all of them are extensions of Segment Anything Model (SAM), improving it for microscopy…

计算机视觉与模式识别 · 计算机科学 2026-03-19 Anwai Archit , Constantin Pape

Few-shot learning is a standard practice in most deep learning based histopathology image segmentation, given the relatively low number of digitized slides that are generally available. While many models have been developed for domain…

图像与视频处理 · 电气工程与系统科学 2021-10-01 Zheng Yuan , Andre Esteva , Ran Xu

Food image segmentation is a critical task for dietary analysis, enabling accurate estimation of food volume and nutrients. However, current methods suffer from limited multi-view data and poor generalization to new viewpoints. We introduce…

Food image segmentation is a critical and indispensible task for developing health-related applications such as estimating food calories and nutrients. Existing food image segmentation models are underperforming due to two reasons: (1)…

计算机视觉与模式识别 · 计算机科学 2021-05-13 Xiongwei Wu , Xin Fu , Ying Liu , Ee-Peng Lim , Steven C. H. Hoi , Qianru Sun

The throughput of electron microscopes has increased significantly in recent years, enabling detailed analysis of cell morphology and ultrastructure. Analysis of neural circuits at single-synapse resolution remains the flagship target of…

计算机视觉与模式识别 · 计算机科学 2019-08-07 Constantin Pape , Alex Matskevych , Adrian Wolny , Julian Hennies , Giula Mizzon , Marion Louveaux , Jacob Musser , Alexis Maizel , Detlev Arendt , Anna Kreshuk

Current deep learning-based approaches for the segmentation of microscopy images heavily rely on large amount of training data with dense annotation, which is highly costly and laborious in practice. Compared to full annotation where the…

计算机视觉与模式识别 · 计算机科学 2023-12-11 Shijie Li , Mengwei Ren , Thomas Ach , Guido Gerig

The demand for accurate food quantification has increased in the recent years, driven by the needs of applications in dietary monitoring. At the same time, computer vision approaches have exhibited great potential in automating tasks within…

计算机视觉与模式识别 · 计算机科学 2023-08-23 Valasia Vlachopoulou , Ioannis Sarafis , Alexandros Papadopoulos

In this paper, we propose a new image instance segmentation method that segments individual glands (instances) in colon histology images. This is a task called instance segmentation that has recently become increasingly important. The…

计算机视觉与模式识别 · 计算机科学 2016-07-15 Yan Xu , Yang Li , Mingyuan Liu , Yipei Wang , Maode Lai , Eric I-Chao Chang

Medical image annotation typically requires expert knowledge and hence incurs time-consuming and expensive data annotation costs. To alleviate this burden, we propose a novel learning scenario, Exemplar Learning (EL), to explore automated…

图像与视频处理 · 电气工程与系统科学 2022-10-11 Qing En , Yuhong Guo