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We extend the notion of the distance to a measure from Euclidean space to probability measures on general metric spaces as a way to do topological data analysis in a way that is robust to noise and outliers. We then give an efficient way to…

计算几何 · 计算机科学 2014-10-09 Mickael Buchet , Frederic Chazal , Steve Y. Oudot , Donald R. Sheehy

Single-cell omics enable the profiles of cells, which contain large numbers of biological features, to be quantified. Cluster analysis, a dimensionality reduction process, is used to reduce the dimensions of the data to make it…

基因组学 · 定量生物学 2024-06-06 Okezue Bell , Arthur Lee , Elizabeth Engle

Subsurface datasets inherently possess big data characteristics such as vast volume, diverse features, and high sampling speeds, further compounded by the curse of dimensionality from various physical, engineering, and geological inputs.…

机器学习 · 计算机科学 2024-03-13 Ademide O. Mabadeje , Michael J. Pyrcz

Dimensionality reduction can be applied to hyperspectral images so that the most useful data can be extracted and processed more quickly. This is critical in any situation in which data volume exceeds the capacity of the computational…

图像与视频处理 · 电气工程与系统科学 2024-02-27 Daniela Lupu , Joseph L. Garrett , Tor Arne Johansen , Milica Orlandic , Ion Necoara

We present a new technique for visualizing high-dimensional data called cluster MDS (cl-MDS), which addresses a common difficulty of dimensionality reduction methods: preserving both local and global structures of the original sample in a…

图形学 · 计算机科学 2024-05-27 Patricia Hernández-León , Miguel A. Caro

Riemannian diffusion models draw inspiration from standard Euclidean space diffusion models to learn distributions on general manifolds. Unfortunately, the additional geometric complexity renders the diffusion transition term inexpressible…

机器学习 · 计算机科学 2023-11-01 Aaron Lou , Minkai Xu , Stefano Ermon

Dimensionality reduction techniques are fundamental for analyzing and visualizing high-dimensional data. With established methods like t-SNE and PCA presenting a trade-off between representational power and interpretability. This paper…

机器学习 · 计算机科学 2025-04-25 Erik Bergh

Dimensional reduction~(DR) maps high-dimensional data into a lower dimensions latent space with minimized defined optimization objectives. The DR method usually falls into feature selection~(FS) and feature projection~(FP). FS focuses on…

机器学习 · 计算机科学 2022-11-24 Zelin Zang , Yongjie Xu , Linyan Lu , Yulan Geng , Senqiao Yang , Stan Z. Li

This book provides an introduction to the theory of digital (molecular) spaces (TDS). Digital spaces are combinatorial models of continuous spaces. TDS is one of alternative branches of digital topology that studies constructing and…

一般拓扑 · 数学 2023-05-04 Alexander V. Evako

Euclidean embeddings of data are fundamentally limited in their ability to capture latent semantic structures, which need not conform to Euclidean spatial assumptions. Here we consider an alternative, which embeds data as discrete…

机器学习 · 计算机科学 2019-05-10 Charlie Frogner , Farzaneh Mirzazadeh , Justin Solomon

We present a novel methodology that utilizes 4-Dimensional (4D) space deformation to simulate a magnification lens on versatile volume datasets and textured solid models. Compared with other magnification methods (e.g., geometric optics,…

图形学 · 计算机科学 2013-11-05 Bo Li , Xin Zhao , Hong Qin

Modeling data as being sampled from a union of independent subspaces has been widely applied to a number of real world applications. However, dimensionality reduction approaches that theoretically preserve this independence assumption have…

机器学习 · 计算机科学 2016-04-08 Devansh Arpit , Ifeoma Nwogu , Venu Govindaraju

Most research into similarity search in metric spaces relies upon the triangle inequality property. This property allows the space to be arranged according to relative distances to avoid searching some subspaces. We show that many common…

信息检索 · 计算机科学 2017-03-03 Richard Connor , Franco Alberto Cardillo , Lucia Vadicamo , Fausto Rabitti

The classification loss functions used in deep neural network classifiers can be grouped into two categories based on maximizing the margin in either Euclidean or angular spaces. Euclidean distances between sample vectors are used during…

计算机视觉与模式识别 · 计算机科学 2022-12-23 Hakan Cevikalp , Hasan Saribas

Many real networks are embedded in space, where in some of them the links length decay as a power law distribution with distance. Indications that such systems can be characterized by the concept of dimension were found recently. Here, we…

物理与社会 · 物理学 2015-06-05 Thorsten Emmerich , Armin Bunde , Shlomo Havlin , Li Guanlian , Li Daqing

In ordinary Dimensionality Reduction (DR), each data instance in a high dimensional space (original space), or on a distance matrix denoting original space distances, is mapped to (projected onto) one point in a low dimensional space…

计算机视觉与模式识别 · 计算机科学 2022-06-28 Farshad Barahimi

This work introduces the Grassmannian Diffusion Maps, a novel nonlinear dimensionality reduction technique that defines the affinity between points through their representation as low-dimensional subspaces corresponding to points on the…

机器学习 · 计算机科学 2021-06-02 K. R. M. dos Santos , D. G. Giovanis , M. D. Shields

Various topological techniques and tools have been applied to neural networks in terms of network complexity, explainability, and performance. One fundamental assumption of this line of research is the existence of a global (Euclidean)…

机器学习 · 计算机科学 2022-01-02 Dongfang Zhao

We introduce "TriMap"; a dimensionality reduction technique based on triplet constraints, which preserves the global structure of the data better than the other commonly used methods such as t-SNE, LargeVis, and UMAP. To quantify the global…

机器学习 · 计算机科学 2022-03-29 Ehsan Amid , Manfred K. Warmuth

We propose a novel probabilistic dimensionality reduction framework that can naturally integrate the generative model and the locality information of data. Based on this framework, we present a new model, which is able to learn a smooth…

机器学习 · 统计学 2016-10-18 Li Wang