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Chemical potential of species in solution is essential for understanding various chemical processes at interfaces. Molecular dynamics (MD) simulations, constrained by fixed compositions, cannot satisfy a constant chemical potential…

化学物理 · 物理学 2025-06-03 Ademola Soyemi , Khagendra Baral , Tibor Szilvasi

Molecular dynamics (MD) simulations are used in biochemistry, physics, and other fields to study the motions, thermodynamic properties, and the interactions between molecules. Computational limitations and the complexity of these problems,…

数值分析 · 数学 2018-01-17 F. Grogan , M. Holst , L. Lindblom , R. Amaro

The potential energy surface (PES) is crucial for interpreting a variety of chemical reaction processes. However, predicting accurate PESs with high-level electronic structure methods is a challenging task due to the high computational…

化学物理 · 物理学 2022-06-09 Yanxian Tao , Xiongzhi Zeng , Yi Fan , Jie Liu , Zhenyu Li , Jinlong Yang

Atomistic simulations provide insights into structure-property relations on an atomic size and length scale, that are complementary to the macroscopic observables that can be obtained from experiments. Quantitative predictions, however, are…

材料科学 · 物理学 2021-04-14 Nataliya Lopanitsyna , Chiheb Ben Mahmoud , Michele Ceriotti

Machine-learned interatomic potentials (MLIPs) are revolutionizing computational materials science and chemistry by offering an efficient alternative to {\em ab initio} molecular dynamics (MD) simulations. However, fitting high-quality…

计算物理 · 物理学 2025-12-12 Ilgar Baghishov , Jan Janssen , Graeme Henkelman , Danny Perez

The increasing number of protein-based metamaterials demands reliable and efficient theoretical and computational methods to study the physicochemical properties they may display. In this regard, we develop a simulation strategy based on…

软凝聚态物质 · 物理学 2020-06-23 J. A. Campos Gonzalez Angulo , G. Wiesehan , R. F. Ribeiro , J. Yuen-Zhou

An interatomic potential for Al-Tb alloy around the composition of Al90Tb10 was developed using the deep neural network (DNN) learning method. The atomic configurations and the corresponding total potential energies and forces on each atom…

材料科学 · 物理学 2023-07-19 L. Tang , Z. J. Yang , T. Q. Wen , K. M. Ho , M. J. Kramer , C. Z. Wang

Deep neural networks lack interpretability and tend to be overconfident, which poses a serious problem in safety-critical applications like autonomous driving, medical imaging, or machine vision tasks with high demands on reliability.…

计算机视觉与模式识别 · 计算机科学 2024-03-27 Steven Landgraf , Kira Wursthorn , Markus Hillemann , Markus Ulrich

A computer simulation has to be fast to be helpful, if it is employed to study the behavior of a multicomponent dynamic system. This paper discusses modeling concepts and algorithmic techniques useful for creating such fast simulations.…

数据结构与算法 · 计算机科学 2007-05-23 Boris D. Lubachevsky

Tin (Sn) plays a crucial role in studying the dynamic mechanical responses of ductile metals under shock loading. Atomistic simulations serves to unveil the nano-scale mechanisms for critical behaviors of dynamic responses. However,…

材料科学 · 物理学 2025-05-20 Yixin Chen , Xiaoyang Wang , Wanghui Li , Mohan Chen , Han Wang

Viscosity is a fundamental property of liquid lubricants, yet it is challenging to determine accurately, especially at high pressures. Although equilibrium molecular dynamics (EMD) simulations are a promising alternative to…

计算物理 · 物理学 2026-03-13 Gözdenur Toraman , Dieter Fauconnier , Toon Verstraelen

Complex turbulent flow simulations are an integral aspect of the engineering design process. The mainstay of these simulations is represented by eddy viscosity based turbulence models. Eddy viscosity models are computationally cheap due to…

流体动力学 · 物理学 2024-08-14 Minghan Chu , Weicheng Qian

Unraveling the dynamical motions of biomolecules is essential for bridging their structure and function, yet it remains a major computational challenge. Molecular dynamics (MD) simulation provides a detailed depiction of biomolecular…

生物大分子 · 定量生物学 2025-09-17 Allan dos Santos Costa , Manvitha Ponnapati , Dana Rubin , Tess Smidt , Joseph Jacobson

Achieving superior polymeric components through additive manufacturing (AM) relies on precise control of rheology. One key rheological property particularly relevant to AM is melt viscosity ($\eta$). Melt viscosity is influenced by polymer…

计算工程、金融与科学 · 计算机科学 2025-04-25 Ayush Jain , Rishi Gurnani , Arunkumar Rajan , H. Jerry Qi , Rampi Ramprasad

We construct a fast, transferable, general purpose, machine-learning interatomic potential suitable for large-scale simulations of $N_2$. The potential is trained only on high quality quantum chemical molecule-molecule interactions, no…

计算物理 · 物理学 2024-05-10 Marcin Kirsz , Ciprian G. Pruteanu , Peter I. C. Cooke , Graeme J. Ackland

The central approximation made in classical molecular dynamics simulation of materials is the interatomic potential used to calculate the forces on the atoms. Great effort and ingenuity is required to construct viable functional forms and…

计算物理 · 物理学 2019-06-26 Mitchell A. Wood , Mary Alice Cusentino , Brian D. Wirth , Aidan P. Thompson

The next generation of force fields for molecular dynamics will be developed using a wealth of data. Training systematically with experimental data remains a challenge, however, especially for machine learning potentials. Differentiable…

生物大分子 · 定量生物学 2025-04-16 Joe G Greener

The multicomponent oxide solid solution is a versatile platform to tune the delicate balance between competing spin, charge, orbital, and lattice degrees of freedom for materials design and discovery. The development of compositionally…

材料科学 · 物理学 2023-04-26 Jing Wu , Jiyuan Yang , Liyang Ma , Linfeng Zhang , Shi Liu

Quasi-N-body simulations, such as FastPM, provide a fast way to simulate cosmological structure formation, but have yet to adequately include the effects of massive neutrinos. We present a method to include neutrino particles in FastPM,…

宇宙学与河外天体物理 · 物理学 2021-01-15 Adrian E. Bayer , Arka Banerjee , Yu Feng

In (M Hodapp and A Shapeev 2020 Mach. Learn.: Sci. Technol. 1 045005), we have proposed an algorithm that fully automatically trains machine-learning interatomic potentials (MLIPs) during large-scale simulations, and successfully applied it…

计算物理 · 物理学 2024-03-28 Laura Mismetti , Max Hodapp
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