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相关论文: A model of membrane deformations driven by a surfa…

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Whether live cell membranes show miscibility phase transitions (MPTs), and if so, how they fluctuate near the transitions remain outstanding unresolved issues in physics and biology alike. Motivated by these questions we construct a generic…

软凝聚态物质 · 物理学 2017-12-01 Tirthankar Banerjee , Abhik Basu

Unravelling the physical mechanisms behind the organisation of lipid domains is a central goal in cell biology and membrane biophysics. Previous studies on cells and model lipid bilayers featuring phase-separated domains found an intricate…

软凝聚态物质 · 物理学 2018-04-24 Melissa Rinaldin , Piermarco Fonda , Luca Giomi , Daniela J. Kraft

Autophagy is an intracellular degradation process that is mediated by de novo formation of autophagosomes. Autophagosome formation involves dynamic morphological changes; a disk-shaped membrane cisterna grows, bends to become a cup-shaped…

生物物理 · 物理学 2020-09-04 Yuji Sakai , Ikuko Koyama-Honda , Masashi Tachikawa , Roland L. Knorr , Noboru Mizushima

Membrane proteins and lipids can self-assemble into membrane protein polyhedral nanoparticles (MPPNs). MPPNs have a closed spherical surface and a polyhedral protein arrangement, and may offer a new route for structure determination of…

生物物理 · 物理学 2017-04-28 Di Li , Osman Kahraman , Christoph A. Haselwandter

A mesoscopic coarse-grain model for computationally-efficient simulations of biomembranes is presented. It combines molecular dynamics simulations for the lipids, modeled as elastic chains of beads, with multiparticle collision dynamics for…

软凝聚态物质 · 物理学 2015-06-04 Mu-Jie Huang , Raymond Kapral , Alexander S. Mikhailov , Hsuan-Yi Chen

Protein aggregation in cell membrane is vital for the majority of biological functions. Recent experimental results suggest that transmembrane domains of proteins such as $\alpha$-helices and $\beta$-sheets have different structural…

生物物理 · 物理学 2016-01-20 Hamidreza Jafarinia , Atefeh Khoshnood , Mir Abbas Jalali

Using field theoretic approach, we study equilibrium shape deformation of a vesicle induced by the presence of enclosed flexible polymers, which is a simple model of drug delivery system or endocytosis. To evaluate the total free energy of…

软凝聚态物质 · 物理学 2015-05-20 Yutaka Oya , Katsuhiko Sato , Toshihiro Kawakatsu

The energetically most efficient way how a deformed red blood cell regains equilibrium is mathematically described by the gradient flow of the Canham-Helfrich functional, including a spontaneous curvature and the conservation of surface…

偏微分方程分析 · 数学 2024-08-15 Fabian Rupp , Christian Scharrer , Manuel Schlierf

We present a simple and computationally efficient coarse-grained and solvent-free model for simulating lipid bilayer membranes. In order to be used in concert with particle-based reaction-diffusion simulations, the model is purely based on…

生物物理 · 物理学 2018-01-31 Mohsen Sadeghi , Thomas R. Weikl , Frank Noé

The shear-induced deformation of a capsule with a stiff nucleus, a model of eukaryotic cells, is studied numerically. The membrane of the cell and of its nucleus are modelled as a thin and impermeable elastic material obeying a Neo-Hookean…

流体动力学 · 物理学 2017-05-29 Arash Alizad Banaei , Jean-Christophe Loiseau , Iman Lashgari , Luca Brandt

We report experimental observations of an undulational instability of myelin figures. Motivated by this, we examine theoretically the deformation and possible instability of concentric, cylindrical, multi-lamellar membrane structures. Under…

软凝聚态物质 · 物理学 2009-11-07 C. -M. Chen , C. F. Schmidt , P. D. Olmsted , F. C. MacKintosh

Proteins in photosynthetic membranes can organize into patterned arrays that span the membrane's lateral size. Attractions between proteins in different layers of a membrane stack can play a key role in this ordering, as was suggested by…

软凝聚态物质 · 物理学 2020-09-09 Andreana M. Rosnik , Phillip L. Geissler

The deformability of vesicles critically influences their engulfment by lipid membranes, a process central to endocytosis, viral entry, drug delivery, and intercellular transport. While theoretical models have long predicted this influence,…

软凝聚态物质 · 物理学 2025-07-24 Stijn van der Ham , Alexander Brown , Halim Kusumaatmaja , Hanumantha Rao Vutukuri

Membrane proteins deform the surrounding lipid bilayer, which can lead to membrane-mediated interactions between neighboring proteins. Using the mechanosensitive channel of large conductance (MscL) as a model system, we demonstrate how the…

生物大分子 · 定量生物学 2016-11-03 Osman Kahraman , William S. Klug , Christoph A. Haselwandter

We present a general and systematic theory of non-equilibrium dynamics of multi-component fluid membranes, in general, and membranes containing transmembrane proteins, in particular. Developed based on a minimal number of principles of…

软凝聚态物质 · 物理学 2009-11-10 Michael A. Lomholt , Per L. Hansen , Ling Miao

Intracellular protein patterns regulate a variety of vital cellular processes such as cell division and motility, which often involve dynamic changes of cell shape. These changes in cell shape may in turn affect the dynamics of…

斑图形成与孤子 · 物理学 2023-07-19 Laeschkir Würthner , Andriy Goychuk , Erwin Frey

Highly oriented solid-supported lipid membranes in stacks of controlled number $N \simeq 16$ (oligo-membranes) have been prepared by spin-coating using the uncharged lipid model system 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC). The…

软凝聚态物质 · 物理学 2015-04-10 Ulrike Mennicke , Doru Constantin , Tim Salditt

Within a coupled-field Ginzburg-Landau model we study analytically phase separation and accompanying shape deformation on a two-phase elastic membrane in simple geometries such as cylinders, spheres and tori. Using an exact periodic domain…

软凝聚态物质 · 物理学 2009-10-31 Y. Jiang , T. Lookman , A. Saxena

We study the effects of chiral constituent molecules on the macroscopic shapes attained by lipid bilayer membranes. Such fluid membranes are beautiful examples of statistical ensembles of random shapes, sometimes coupled to in-plane order.…

凝聚态物理 · 物理学 2008-02-03 P. Nelson , T. Powers

Biologically inspired pressure actuated cellular structures can alter their shape through pressure variations. Previous work introduced a computational framework for pressure actuated cellular structures which was limited to two cell rows…

定量方法 · 定量生物学 2017-04-10 Markus Pagitz , Remco I. Leine