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Classification and quantitative characterization of neuronal morphologies from histological neuronal reconstruction is challenging since it is still unclear how to delineate a neuronal cell class and which are the best features to define…

神经元与认知 · 定量生物学 2025-03-05 Xavier Vasques , Laurent Vanel , Guillaume Villette , Laura Cif

This paper describes how realistic neuromorphic networks can have their connectivity fully characterized in analytical fashion. By assuming that all neurons have the same shape and are regularly distributed along the two-dimensional…

无序系统与神经网络 · 物理学 2007-05-23 Luciano da Fontoura Costa , Marconi Soares Barbosa

Measuring similarity of neural networks to understand and improve their behavior has become an issue of great importance and research interest. In this survey, we provide a comprehensive overview of two complementary perspectives of…

机器学习 · 计算机科学 2025-05-22 Max Klabunde , Tobias Schumacher , Markus Strohmaier , Florian Lemmerich

This paper describes how realistic neuromorphic networks can have their connectivity properties fully characterized in analytical fashion. By assuming that all neurons have the same shape and are regularly distributed along the…

无序系统与神经网络 · 物理学 2009-11-10 Luciano da F. Costa

Graph theoretical approach has proved an effective tool to understand, characterize and quantify the complex brain network. However, much less attention has been paid to methods that quantitatively compare two graphs, a crucial issue in the…

神经元与认知 · 定量生物学 2019-08-29 Ahmad Mheich , Fabrice Wendling , Mahmoud Hassan

Classification of biological neuron types and networks poses challenges to the full understanding of the brain's organisation and functioning. In this paper, we develop a novel objective classification model of biological neuronal types and…

神经元与认知 · 定量生物学 2020-03-31 Michael Taynnan Barros , Harun Siljak , Peter Mullen , Constantinos Papadias , Jari Hyttinen , Nicola Marchetti

The shape and connectivity of a neuron determine its function. Modern imaging methods have proven successful at extracting such information. However, in order to analyze this type of data, neuronal morphology needs to be encoded in a…

神经元与认知 · 定量生物学 2019-03-07 Tamal Batabyal , Barry Condron , Scott T. Acton

This article discusses how the individual morphological properties of basic objects (e.g. neurons, molecules and aggregates), jointly with their particular spatial distribution, can determine the connectivity and dynamics of systems…

分子网络 · 定量生物学 2007-05-23 Luciano da Fontoura Costa

The coincidence similarity index, based on a combination of the Jaccard and overlap similarity indices, has noticeable properties in comparing and classifying data, including enhanced selectivity and sensitivity, intrinsic normalization,…

神经与进化计算 · 计算机科学 2023-08-29 Alexandre Benatti , Luciano da Fontoura Costa

Network representations of systems from various scientific and societal domains are neither completely random nor fully regular, but instead appear to contain recurring structural building blocks. These features tend to be shared by…

社会与信息网络 · 计算机科学 2016-10-20 Ian Barnett , Nishant Malik , Marieke L. Kuijjer , Peter J. Mucha , Jukka-Pekka Onnela

Different network models have been suggested for the topology underlying complex interactions in natural systems. These models are aimed at replicating specific statistical features encountered in real-world networks. However, it is rarely…

物理与社会 · 物理学 2012-06-11 Stefano Cardanobile , Volker Pernice , Moritz Deger , Stefan Rotter

Complex systems in the real world can be modeled as a network of connected components. The human brain, as a network of neurons among which the interactions cause perception, is a complex network. Synchronization is a dynamical phenomenon…

生物物理 · 物理学 2019-04-30 Arefeh Mazarei , Mohammad Amirian Matlob , Gholamhossein Riazi , Yousef Jamali

Inspired by biology's most sophisticated computer, the brain, neural networks constitute a profound reformulation of computational principles. Remarkably, analogous high-dimensional, highly-interconnected computational architectures also…

无序系统与神经网络 · 物理学 2024-01-23 Constantine Glen Evans , Jackson O'Brien , Erik Winfree , Arvind Murugan

Network models have been widely used to study diverse systems and analyze their dynamic behaviors. Given the structural variability of networks, an intriguing question arises: Can we infer the type of system represented by a network based…

社会与信息网络 · 计算机科学 2025-05-29 Gonzalo Travieso , Joao Merenda , Odemir M. Bruno

The behavior of neural networks still remains opaque, and a recently widely noted phenomenon is that networks often achieve similar performance when initialized with different random parameters. This phenomenon has attracted significant…

机器学习 · 计算机科学 2023-11-28 Yiting Chen , Zhanpeng Zhou , Junchi Yan

Graph theory has drawn a lot of attention in the field of Neuroscience during the last decade, mainly due to the abundance of tools that it provides to explore the interactions of elements in a complex network like the brain. The local and…

神经元与认知 · 定量生物学 2016-11-16 Sofia Ira Ktena , Sarah Parisot , Jonathan Passerat-Palmbach , Daniel Rueckert

The ability to compare complex systems can provide new insight into the fundamental nature of the processes captured in ways that are otherwise inaccessible to observation. Here, we introduce the $n$-tangle method to directly compare two…

物理与社会 · 物理学 2014-11-27 Lazaros K. Gallos , Nina H. Fefferman

Neuronal networks constitute a special class of dynamical systems, as they are formed by individual geometrical components, namely the neurons. In the existing literature, relatively little attention has been given to the influence of…

神经元与认知 · 定量生物学 2015-05-13 Sebastian Ahnert , Luciano da Fontoura Costa

Mathematical morphology is a theory and technique to collect features like geometric and topological structures in digital images. Given a target image, determining suitable morphological operations and structuring elements is a cumbersome…

计算机视觉与模式识别 · 计算机科学 2019-09-05 Yucong Shen , Xin Zhong , Frank Y. Shih

A suitable similarity index for comparing learnt neural networks plays an important role in understanding the behaviour of the highly-nonlinear functions, and can provide insights on further theoretical analysis and empirical studies. We…

机器学习 · 计算机科学 2020-03-26 Shuai Tang , Wesley J. Maddox , Charlie Dickens , Tom Diethe , Andreas Damianou
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