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Machine learning (ML) methods have drawn significant interest in material design and discovery. Graph neural networks (GNNs), in particular, have demonstrated strong potential for predicting material properties. The present study proposes a…

The practical applications of determining the relative difference in adsorption energies are extensive, such as identifying optimal catalysts, calculating reaction energies, and determining the lowest adsorption energy on a catalytic…

计算物理 · 物理学 2025-04-21 Janghoon Ock , Tian Tian , John Kitchin , Zachary Ulissi

Graph neural networks (GNNs) for link prediction can loosely be divided into two broad categories. First, \emph{node-wise} architectures pre-compute individual embeddings for each node that are later combined by a simple decoder to make…

机器学习 · 计算机科学 2024-12-31 Yuxin Wang , Xiannian Hu , Quan Gan , Xuanjing Huang , Xipeng Qiu , David Wipf

Most Graph Neural Networks (GNNs) cannot distinguish some graphs or indeed some pairs of nodes within a graph. This makes it impossible to solve certain classification tasks. However, adding additional node features to these models can…

机器学习 · 计算机科学 2022-09-20 Beni Egressy , Roger Wattenhofer

We explore different strategies to integrate prior domain knowledge into the design of a deep neural network (DNN). We focus on graph neural networks (GNN), with a use case of estimating the potential energy of chemical systems (molecules…

机器学习 · 计算机科学 2022-08-26 Jay Morgan , Adeline Paiement , Christian Klinke

The emergence of deep learning (DL) has provided great opportunities for the high-throughput analysis of atomic-resolution micrographs. However, the DL models trained by image patches in fixed size generally lack efficiency and flexibility…

Graph neural networks (GNNs) are designed to process data associated with graphs. They are finding an increasing range of applications; however, as with other modern machine learning techniques, their theoretical understanding is limited.…

无序系统与神经网络 · 物理学 2026-02-23 O. Duranthon , L. Zdeborová

Accurately predicting the elastic properties of crystalline solids is vital for computational materials science. However, traditional atomistic scale ab initio approaches are computationally intensive, especially for studying complex…

无序系统与神经网络 · 物理学 2023-11-13 Teerachote Pakornchote , Annop Ektarawong , Thiparat Chotibut

Subgraph matching plays an important role in electronic design automation (EDA) and circuit verification. Traditional rule-based methods have limitations in generalizing to arbitrary target circuits. Furthermore, node-to-node matching…

机器学习 · 计算机科学 2025-07-29 Sangwoo Seo , Jimin Seo , Yoonho Lee , Donghyeon Kim , Hyejin Shin , Banghyun Sung , Chanyoung Park

Graph Neural Networks (GNNs) have deeply modified the landscape of numerical simulations by demonstrating strong capabilities in approximating solutions of physical systems. However, their ability to extrapolate beyond their training domain…

机器学习 · 计算机科学 2025-08-27 Paul Garnier , Jonathan Viquerat , Elie Hachem

Large-scale or high-resolution geologic models usually comprise a huge number of grid blocks, which can be computationally demanding and time-consuming to solve with numerical simulators. Therefore, it is advantageous to upscale geologic…

机器学习 · 计算机科学 2022-01-04 Nanzhe Wang , Qinzhuo Liao , Haibin Chang , Dongxiao Zhang

We apply a temporal edge prediction model for weighted dynamic graphs to predict time-dependent changes in molecular structure. Each molecule is represented as a complete graph in which each atom is a vertex and all vertex pairs are…

机器学习 · 计算机科学 2021-06-28 Michael Hunter Ashby , Jenna A. Bilbrey

Learning from graph-structured data is an important task in machine learning and artificial intelligence, for which Graph Neural Networks (GNNs) have shown great promise. Motivated by recent advances in geometric representation learning, we…

机器学习 · 计算机科学 2019-10-30 Qi Liu , Maximilian Nickel , Douwe Kiela

Graph neural networks (GNNs) have achieved success in various inference tasks on graph-structured data. However, common challenges faced by many GNNs in the literature include the problem of graph node embedding under various geometries and…

机器学习 · 计算机科学 2023-03-03 Qiyu Kang , Kai Zhao , Yang Song , Sijie Wang , Rui She , Wee Peng Tay

Graph Neural Networks (GNNs) have become the state-of-the-art method for many applications on graph structured data. GNNs are a model for graph representation learning, which aims at learning to generate low dimensional node embeddings that…

机器学习 · 计算机科学 2022-05-23 Davide Buffelli , Fabio Vandin

This paper presents a novel graph-based deep learning model for tasks involving relations between two nodes (edge-centric tasks), where the focus lies on predicting relationships and interactions between pairs of nodes rather than node…

机器学习 · 计算机科学 2025-07-08 Eugenio Borzone , Leandro Di Persia , Matias Gerard

Recently, Graph Neural Networks (GNNs) have become state-of-the-art algorithms for analyzing non-euclidean graph data. However, to realize efficient GNN training is challenging, especially on large graphs. The reasons are many-folded: 1)…

机器学习 · 计算机科学 2022-08-17 Zhe Zhou , Cong Li , Xuechao Wei , Xiaoyang Wang , Guangyu Sun

We present a novel machine learning approach for data assimilation applied in fluid mechanics, based on adjoint-optimization augmented by Graph Neural Networks (GNNs) models. We consider as baseline the Reynolds-Averaged Navier-Stokes…

This study presents a novel Machine Learning Algorithm, named Chemical Environment Graph Neural Network (ChemGNN), designed to accelerate materials property prediction and advance new materials discovery. Graphitic carbon nitride (g-C3N4)…

化学物理 · 物理学 2023-09-20 Chen Chen , Enze Xu , Defu Yang , Chenggang Yan , Tao Wei , Hanning Chen , Yong Wei , Minghan Chen

Graph Neural Networks (GNNs) have shown exceptional success in graph representation learning and a wide range of real-world applications. However, scaling deeper GNNs poses challenges due to the neighbor explosion problem when training on…

机器学习 · 计算机科学 2025-11-18 Rui Xue