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Clinical oncology generates vast, unstructured data that often contain inconsistencies, missing information, and ambiguities, making it difficult to extract reliable insights for data-driven decision-making. General-purpose large language…

计算与语言 · 计算机科学 2025-03-12 Morteza Rohanian , Tarun Mehra , Nicola Miglino , Farhad Nooralahzadeh , Michael Krauthammer , Andreas Wicki

Named Entity Recognition (NER) has greatly advanced by the introduction of deep neural architectures. However, the success of these methods depends on large amounts of training data. The scarcity of publicly-available human-labeled datasets…

计算与语言 · 计算机科学 2020-03-09 Barbara Plank

This study evaluated the effect of BioBERT in medical text processing for the task of medical named entity recognition. Through comparative experiments with models such as BERT, ClinicalBERT, SciBERT, and BlueBERT, the results showed that…

计算与语言 · 计算机科学 2024-12-12 Jiacheng Hu , Runyuan Bao , Yang Lin , Hanchao Zhang , Yanlin Xiang

Recent advances in natural language processing (NLP) have been driven bypretrained language models like BERT, RoBERTa, T5, and GPT. Thesemodels excel at understanding complex texts, but biomedical literature, withits domain-specific…

计算与语言 · 计算机科学 2025-07-28 K. Sahit Reddy , N. Ragavenderan , Vasanth K. , Ganesh N. Naik , Vishalakshi Prabhu , Nagaraja G. S

Named-entity recognition (NER) is fundamental to extracting structured information from the >80% of healthcare data that resides in unstructured clinical notes and biomedical literature. Despite recent advances with large language models,…

计算与语言 · 计算机科学 2025-08-05 Maziyar Panahi

The field of clinical natural language processing has been advanced significantly since the introduction of deep learning models. The self-supervised representation learning and the transfer learning paradigm became the methods of choice in…

计算与语言 · 计算机科学 2020-04-27 Andrey Kormilitzin , Nemanja Vaci , Qiang Liu , Alejo Nevado-Holgado

Language model (LM) pretraining has led to consistent improvements in many NLP downstream tasks, including named entity recognition (NER). In this paper, we present T-NER (Transformer-based Named Entity Recognition), a Python library for…

计算与语言 · 计算机科学 2022-09-27 Asahi Ushio , Jose Camacho-Collados

Large Language Models (LLMs) have demonstrated impressive capabilities for generalizing in unseen tasks. In the Named Entity Recognition (NER) task, recent advancements have seen the remarkable improvement of LLMs in a broad range of entity…

计算与语言 · 计算机科学 2024-06-21 Yuyang Ding , Juntao Li , Pinzheng Wang , Zecheng Tang , Bowen Yan , Min Zhang

Pre-trained transformer language models (TLMs) have recently refashioned natural language processing (NLP): Most state-of-the-art NLP models now operate on top of TLMs to benefit from contextualization and knowledge induction. To explain…

计算与语言 · 计算机科学 2020-07-09 Karolina Zaczynska , Nils Feldhus , Robert Schwarzenberg , Aleksandra Gabryszak , Sebastian Möller

Although Large Language Models (LLMs) exhibit remarkable adaptability across domains, these models often fall short in structured knowledge extraction tasks such as named entity recognition (NER). This paper explores an innovative,…

计算与语言 · 计算机科学 2024-06-11 Yuzhao Heng , Chunyuan Deng , Yitong Li , Yue Yu , Yinghao Li , Rongzhi Zhang , Chao Zhang

Named entity recognition (NER) is the task to identify mentions of rigid designators from text belonging to predefined semantic types such as person, location, organization etc. NER always serves as the foundation for many natural language…

计算与语言 · 计算机科学 2023-04-26 Jing Li , Aixin Sun , Jianglei Han , Chenliang Li

Objective: The generalizability of clinical large language models is usually ignored during the model development process. This study evaluated the generalizability of BERT-based clinical NLP models across different clinical settings…

计算与语言 · 计算机科学 2023-03-16 Sicheng Zhou , Nan Wang , Liwei Wang , Ju Sun , Anne Blaes , Hongfang Liu , Rui Zhang

Neural language representation models such as BERT pre-trained on large-scale corpora can well capture rich semantic patterns from plain text, and be fine-tuned to consistently improve the performance of various NLP tasks. However, the…

计算与语言 · 计算机科学 2019-06-05 Zhengyan Zhang , Xu Han , Zhiyuan Liu , Xin Jiang , Maosong Sun , Qun Liu

Background: Machine learning methods for clinical named entity recognition and entity normalization systems can utilize both labeled corpora and Knowledge Graphs (KGs) for learning. However, infrequently occurring concepts may have few…

计算与语言 · 计算机科学 2024-10-11 Kuleen Sasse , Shinjitha Vadlakonda , Richard E. Kennedy , John D. Osborne

Named Entity Recognition (NER) is essential in various Natural Language Processing (NLP) applications. Traditional NER models are effective but limited to a set of predefined entity types. In contrast, Large Language Models (LLMs) can…

计算与语言 · 计算机科学 2023-11-16 Urchade Zaratiana , Nadi Tomeh , Pierre Holat , Thierry Charnois

Prevalent solution for BioNER involves using representation learning techniques coupled with sequence labeling. However, such methods are inherently task-specific, demonstrate poor generalizability, and often require dedicated model for…

计算与语言 · 计算机科学 2024-04-30 Junyi Biana , Weiqi Zhai , Xiaodi Huang , Jiaxuan Zheng , Shanfeng Zhu

Ever-larger language models with ever-increasing capabilities are by now well-established text processing tools. Alas, information extraction tasks such as named entity recognition are still largely unaffected by this progress as they are…

计算与语言 · 计算机科学 2023-08-16 Tobias Deußer , Lars Hillebrand , Christian Bauckhage , Rafet Sifa

Contextual word embedding models such as ELMo (Peters et al., 2018) and BERT (Devlin et al., 2018) have dramatically improved performance for many natural language processing (NLP) tasks in recent months. However, these models have been…

计算与语言 · 计算机科学 2019-06-24 Emily Alsentzer , John R. Murphy , Willie Boag , Wei-Hung Weng , Di Jin , Tristan Naumann , Matthew B. A. McDermott

Large language models (LLMs) allow us to generate high-quality human-like text. One interesting task in natural language processing (NLP) is named entity recognition (NER), which seeks to detect mentions of relevant information in…

计算与语言 · 计算机科学 2024-06-10 Fabián Villena , Luis Miranda , Claudio Aracena

Named entity recognition (NER) is frequently addressed as a sequence classification task where each input consists of one sentence of text. It is nevertheless clear that useful information for the task can often be found outside of the…

计算与语言 · 计算机科学 2020-12-18 Jouni Luoma , Sampo Pyysalo