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The current state of adoption of well-structured electronic health records and integration of digital methods for storing medical patient data in structured formats can often considered as inferior compared to the use of traditional,…

计算与语言 · 计算机科学 2021-12-13 Johann Frei , Frank Kramer

Obtaining text datasets with semantic annotations is an effortful process, yet crucial for supervised training in natural language processsing (NLP). In general, developing and applying new NLP pipelines in domain-specific contexts for…

计算与语言 · 计算机科学 2022-09-01 Johann Frei , Frank Kramer

The use of BERT, one of the most popular language models, has led to improvements in many Natural Language Processing (NLP) tasks. One such task is Named Entity Recognition (NER) i.e. automatic identification of named entities such as…

计算与语言 · 计算机科学 2023-03-10 Harshil Darji , Jelena Mitrović , Michael Granitzer

Recent advances in natural language processing (NLP) can be largely attributed to the advent of pre-trained language models such as BERT and RoBERTa. While these models demonstrate remarkable performance on general datasets, they can…

In this paper, we present our approach to extracting structured information from unstructured Electronic Health Records (EHR) [2] which can be used to, for example, study adverse drug reactions in patients due to chemicals in their…

计算与语言 · 计算机科学 2020-01-30 Amogh Kamat Tarcar , Aashis Tiwari , Vineet Naique Dhaimodker , Penjo Rebelo , Rahul Desai , Dattaraj Rao

Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…

计算与语言 · 计算机科学 2023-12-27 Fahime Shahrokh , Nasser Ghadiri , Rasoul Samani , Milad Moradi

In biomedical natural language processing, named entity recognition (NER) and named entity normalization (NEN) are key tasks that enable the automatic extraction of biomedical entities (e.g. diseases and drugs) from the ever-growing…

计算与语言 · 计算机科学 2022-10-07 Mujeen Sung , Minbyul Jeong , Yonghwa Choi , Donghyeon Kim , Jinhyuk Lee , Jaewoo Kang

Large language models (LLMs) have demonstrated dominating performance in many NLP tasks, especially on generative tasks. However, they often fall short in some information extraction tasks, particularly those requiring domain-specific…

计算与语言 · 计算机科学 2023-09-22 Junyi Bian , Jiaxuan Zheng , Yuyi Zhang , Shanfeng Zhu

Pre-trained transformer language models (LMs) have in recent years become the dominant paradigm in applied NLP. These models have achieved state-of-the-art performance on tasks such as information extraction, question answering, sentiment…

计算与语言 · 计算机科学 2025-04-14 Aidan Mannion , Thierry Chevalier , Didier Schwab , Lorraine Geouriot

Natural language tasks like Named Entity Recognition (NER) in the clinical domain on non-English texts can be very time-consuming and expensive due to the lack of annotated data. Cross-lingual transfer (CLT) is a way to circumvent this…

计算与语言 · 计算机科学 2023-06-08 Xavier Fontaine , Félix Gaschi , Parisa Rastin , Yannick Toussaint

For named entity recognition (NER), bidirectional recurrent neural networks became the state-of-the-art technology in recent years. Competing approaches vary with respect to pre-trained word embeddings as well as models for character…

计算与语言 · 计算机科学 2018-11-08 Gregor Wiedemann , Raghav Jindal , Chris Biemann

Biomedical named entity recognition (NER) presents unique challenges due to specialized vocabularies, the sheer volume of entities, and the continuous emergence of novel entities. Traditional NER models, constrained by fixed taxonomies and…

计算与语言 · 计算机科学 2025-05-22 Anthony Yazdani , Ihor Stepanov , Douglas Teodoro

Named entity recognition (NER) stands as a fundamental and pivotal task within the realm of Natural Language Processing. Particularly within the domain of Biomedical Method NER, this task presents notable challenges, stemming from the…

计算与语言 · 计算机科学 2024-07-01 Chen Tang , Bohao Yang , Kun Zhao , Bo Lv , Chenghao Xiao , Frank Guerin , Chenghua Lin

The task of Named Entity Recognition (NER) is an important component of many natural language processing systems, such as relation extraction and knowledge graph construction. In this work, we present a simple and effective approach for…

计算与语言 · 计算机科学 2022-03-29 Urchade Zaratiana , Pierre Holat , Nadi Tomeh , Thierry Charnois

The availability of large amounts of computer-readable textual data and hardware that can process the data has shifted the focus of knowledge projects towards deep learning architecture. Natural Language Processing, particularly the task of…

计算与语言 · 计算机科学 2021-01-28 Arya Roy

Named Entity Recognition (NER) is a fundamental Natural Language Processing (NLP) task to extract entities from unstructured data. The previous methods for NER were based on machine learning or deep learning. Recently, pre-training models…

计算与语言 · 计算机科学 2020-02-21 Yu Wang , Yining Sun , Zuchang Ma , Lisheng Gao , Yang Xu , Ting Sun

The purpose of this study is to analyze the efficacy of transfer learning techniques and transformer-based models as applied to medical natural language processing (NLP) tasks, specifically radiological text classification. We used 1,977…

计算与语言 · 计算机科学 2020-02-19 Daniel Ranti , Katie Hanss , Shan Zhao , Varun Arvind , Joseph Titano , Anthony Costa , Eric Oermann

Biomedical named entity recognition (NER) is a fundamental task in text mining of medical documents and has many applications. Deep learning based approaches to this task have been gaining increasing attention in recent years as their…

计算与语言 · 计算机科学 2018-08-16 Devendra Singh Sachan , Pengtao Xie , Mrinmaya Sachan , Eric P Xing

Named entity recognition (NER) is evolving from a sequence labeling task into a generative paradigm with the rise of large language models (LLMs). We conduct a systematic evaluation of open-source LLMs on both flat and nested NER tasks. We…

计算与语言 · 计算机科学 2026-01-27 Qi Zhan , Yile Wang , Hui Huang

The use of LLMs for natural language processing has become a popular trend in the past two years, driven by their formidable capacity for context comprehension and learning, which has inspired a wave of research from academics and industry…

计算与语言 · 计算机科学 2024-04-09 Faren Yan , Peng Yu , Xin Chen
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