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Directed cell motion in response to an external chemical gradient occurs in many biological phenomena such as wound healing, angiogenesis, and cancer metastasis. Chemotaxis is often characterized by the accuracy, persistence, and speed of…

细胞行为 · 定量生物学 2019-06-19 Julien Varennes , Hye-ran Moon , Soutick Saha , Andrew Mugler , Bumsoo Han

Cell colonies of bacteria, tumour cells and fungi, under nutrient limited growth conditions, exhibit complex branched growth patterns. In order to investigate this phenomenon we present a simple hybrid cellular automaton model of cell…

生物物理 · 物理学 2007-05-23 P. Gerlee , A. R. A Anderson

We present significantly advanced studies of the previously introduced physical growth mechanism and unite it with biochemical growth factors. Obtained results allowed formulating the general growth law which governs growth and evolutional…

其他定量生物学 · 定量生物学 2012-11-29 Yu. K. Shestopaloff

Let $(X_t)_{t \geq 0}$ be a continuous time Markov process on some metric space $M,$ leaving invariant a closed subset $M_0 \subset M,$ called the {\em extinction set}. We give general conditions ensuring either "Stochastic persistence"…

概率论 · 数学 2023-10-26 Michel Benaim

Response time-delay is an ubiquitous phenomenon in biological systems. Here we use a simple stochastic population model with time-delayed switching-rate conversion to quantitatively study the biological influence of the response time-delay…

种群与进化 · 定量生物学 2009-04-14 Xiao chuan Xue , Jinhua Zhao , Fei Liu , Zhong-can Ou-Yang

We are interested in modeling the Darwinian evolution resulting from the interplay of phenotypic variation and natural selection through ecological interactions, in the specific scales of the biological framework of adaptive dynamics.…

概率论 · 数学 2013-02-05 Nicolas Champagnat , Pierre-Emmanuel Jabin , Sylvie Méléard

A new delay equation is introduced to describe the punctuated evolution of complex nonlinear systems. A detailed analytical and numerical investigation provides the classification of all possible types of solutions for the dynamics of a…

适应与自组织系统 · 物理学 2015-05-13 V. I. Yukalov , E. P. Yukalova , D. Sornette

We consider a Nicholson's equation with multiple pairs of time-varying delays and nonlinear terms given by mixed monotone functions. Sufficient conditions for the permanence, local stability and global attractivity of its positive…

经典分析与常微分方程 · 数学 2021-12-22 Teresa Faria , Henrique C. Prates

Signal duration (e.g. the time scales over which an active signaling intermediate persists) is a key regulator of biological decisions in myriad contexts such as cell growth, proliferation, and developmental lineage commitments.…

分子网络 · 定量生物学 2008-02-20 Jason W. Locasale

In this paper, we obtain sufficient conditions for the permanence of a family of nonautonomous systems of delay differential equations. This family includes structured models from mathematical biology, with either discrete or distributed…

动力系统 · 数学 2021-06-22 Teresa Faria

We consider the modeling of the dynamics of the chemostat at its very source. The chemostat is classically represented as a system of ordinary differential equations. Our goal is to establish a stochastic model that is valid at the scale…

定量方法 · 定量生物学 2011-07-07 Fabien Campillo , Marc Joannides , Irène Larramendy

The purpose of this paper is to show that it is possible to replace Monod's type model of a chemostat by a constraint based model of bacteria at the genome scale. This new model is an extension of the RBA model of bacteria developed in a…

细胞行为 · 定量生物学 2019-12-04 Marc Dinh , Vincent Fromion

Quantitative assessment of the growth of biological organisms has produced many mathematical equations. Many efforts have been given on statistical identification of the correct growth model from experimental data. Every growth equation is…

统计方法学 · 统计学 2021-02-17 Md Aktar Ul Karim , Supriya Ramdas Bhagat , Amiya Ranjan Bhowmick

Delay differential equations are used as a model when the effect of past states has to be taken into account. In this work we consider delay models of chemical reaction networks with mass action kinetics. We obtain a sufficient condition…

动力系统 · 数学 2020-06-05 Gheorghe Craciun , Maya Mincheva , Casian Pantea , Polly Y. Yu

New checkable criteria for persistence of chemical reaction networks are proposed, which extend and complement those obtained by the authors in previous work. The new results allow the consideration of reaction rates which are time-varying,…

分子网络 · 定量生物学 2009-05-12 David Angeli , Patrick De Leenheer , Eduardo Sontag

Long-term memory is a feature observed in systems ranging from neural networks to epidemiological models. The memory in such systems is usually modeled by the time delay. Furthermore, the nonlocal operators, such as the "fractional order…

动力系统 · 数学 2023-05-12 Divya D. Joshi , Sachin Bhalekar , Prashant M. Gade

We investigate stability of linear delay differential systems. Stability criteria of the systems are derived based on integrals of the fundamental matrix. They are necessary and sufficient conditions for delay-dependent stability of the…

最优化与控制 · 数学 2024-10-30 Guang-Da Hu

First, we systemize ealier results the uniform persistence for discrete model $A_{n+1}=A_nF(A_{n-m})$ of population growth, where $F:(0,\infty)\to(0,\infty)$ is continuous and strictly decreasing. Second, we investigation the effect of…

综合数学 · 数学 2012-06-11 Dang Vu Giang

The paper is devoted to the study of stability of equilibrium solutions of a delay differential equation that models leukemia. The equation was previously studied in [5] and [6], where the emphasis is put on the numerical study of periodic…

动力系统 · 数学 2010-01-27 Anca Veronica Ion

The modelling of memristive devices is an essential part of the development of novel in-memory computing systems. Models are needed to enable the accurate and efficient simulation of memristor device characteristics, for purposes of testing…

新兴技术 · 计算机科学 2024-08-06 Waleed El-Geresy , Christos Papavassiliou , Deniz Gündüz