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Complex systems are increasingly being viewed as distributed information processing systems, particularly in the domains of computational neuroscience, bioinformatics and Artificial Life. This trend has resulted in a strong uptake in the…

信息论 · 计算机科学 2014-12-04 Joseph T. Lizier

KnowIt (Knowledge discovery in time series data) is a flexible framework for building deep time series models and interpreting them. It is implemented as a Python toolkit, with source code and documentation available from…

机器学习 · 计算机科学 2026-02-19 M. W. Theunissen , R. Rabe , H. L. Potgieter , M. H. Davel

This paper introduces the multi-freq-ldpy Python package for multiple frequency estimation under Local Differential Privacy (LDP) guarantees. LDP is a gold standard for achieving local privacy with several real-world implementations by big…

密码学与安全 · 计算机科学 2022-09-26 Héber H. Arcolezi , Jean-François Couchot , Sébastien Gambs , Catuscia Palamidessi , Majid Zolfaghari

Recent advances in computational methods for designing biological sequences have sparked the development of metrics to evaluate these methods performance in terms of the fidelity of the designed sequences to a target distribution and their…

This paper shows that further evaluation metrics during model training are needed to decide about its applicability in inference. As an example, a LayoutLM-based model is trained for token classification in documents. The documents are…

计算机视觉与模式识别 · 计算机科学 2025-04-03 Anket Mehra , Malte Prieß , Marian Himstedt

Exploiting the recent advancements in artificial intelligence, showcased by ChatGPT and DALL-E, in real-world applications necessitates vast, domain-specific, and publicly accessible datasets. Unfortunately, the scarcity of such datasets…

机器学习 · 计算机科学 2023-05-17 Cyril Picard , Jürg Schiffmann , Faez Ahmed

Computational materials science produces large quantities of data, both in terms of high-throughput calculations and individual studies. Extracting knowledge from this large and heterogeneous pool of data is challenging due to the wide…

材料科学 · 物理学 2024-10-23 Martin Kuban , Santiago Rigamonti , Claudia Draxl

Here we present our Python toolbox "MR. Estimator" to reliably estimate the intrinsic timescale from electrophysiologal recordings of heavily subsampled systems. Originally intended for the analysis of time series from neuronal spiking…

神经元与认知 · 定量生物学 2021-05-11 F. P. Spitzner , J. Dehning , J. Wilting , A. Hagemann , J. P. Neto , J. Zierenberg , V. Priesemann

I present a Python package developed for fitting Voigt profiles to absorption lines. The software fits multiple components for various atomic lines simultaneously allowing parameters to be tied and fixed. Moreover, the code is able to…

天体物理仪器与方法 · 物理学 2018-03-06 Jens-Kristian Krogager

This paper introduces the Intrinsic Dimension Estimating Autoencoder (IDEA), which identifies the underlying intrinsic dimension of a wide range of datasets whose samples lie on either linear or nonlinear manifolds. Beyond estimating the…

机器学习 · 计算机科学 2026-01-22 Antoine Oriou , Philipp Krah , Julian Koellermeier

Scikit-learn is an increasingly popular machine learning li- brary. Written in Python, it is designed to be simple and efficient, accessible to non-experts, and reusable in various contexts. In this paper, we present and discuss our design…

Estimating albedo (a.k.a., intrinsic image decomposition) from single RGB images captured in real-world environments (e.g., the MVImgNet dataset) presents a significant challenge due to the absence of paired images and their ground truth…

图形学 · 计算机科学 2025-09-03 Xiaokang Wei , Zizheng Yan , Zhangyang Xiong , Yiming Hao , Yipeng Qin , Xiaoguang Han

SocialED is a comprehensive, open-source Python library designed to support social event detection (SED) tasks, integrating 19 detection algorithms and 14 diverse datasets. It provides a unified API with detailed documentation, offering…

机器学习 · 计算机科学 2024-12-19 Kun Zhang , Xiaoyan Yu , Pu Li , Hao Peng , Philip S. Yu

Machine learning has enabled differential cross section measurements that are not discretized. Going beyond the traditional histogram-based paradigm, these unbinned unfolding methods are rapidly being integrated into experimental workflows.…

高能物理 - 唯象学 · 物理学 2025-05-28 Ryan Milton , Vinicius Mikuni , Trevin Lee , Miguel Arratia , Tanvi Wamorkar , Benjamin Nachman

The Information Dynamics Toolkit xl (IDTxl) is a comprehensive software package for efficient inference of networks and their node dynamics from multivariate time series data using information theory. IDTxl provides functionality to…

Intrinsic dimension and differential entropy estimators are studied in this paper, including their systematic bias. A pragmatic approach for joint estimation and bias correction of these two fundamental measures is proposed. Shared steps on…

机器学习 · 统计学 2020-05-01 Jugurta Montalvão , Jânio Canuto , Luiz Miranda

Methodology bugs in scientific Python code produce plausible but incorrect results that traditional linters and static analysis tools cannot detect. Several research groups have built ML-specific linters, demonstrating that detection is…

软件工程 · 计算机科学 2026-03-19 Sergey V. Samsonau

Time-to-event (survival) analysis models the time until a pre-specified event occurs. When time is measured in discrete units or rounded into intervals, standard continuous-time models can yield biased estimators. In addition, the event of…

机器学习 · 统计学 2025-11-19 Tomer Meir , Rom Gutman , Malka Gorfine

Depth estimation and 3D reconstruction have been extensively studied as core topics in computer vision. Starting from rigid objects with relatively simple geometric shapes, such as vehicles, the research has expanded to address general…

计算机视觉与模式识别 · 计算机科学 2026-03-30 Muhammad Aamir , Naoya Muramatsu , Sangyun Shin , Matthew Wijers , Jia-Xing Zhong , Xinyu Hou , Amir Patel , Andrew Loveridge , Andrew Markham

High-dimensional datasets often exhibit low-dimensional geometric structures, as suggested by the manifold hypothesis, which implies that data lie on a smooth manifold embedded in a higher-dimensional ambient space. While this insight…

机器学习 · 计算机科学 2025-07-11 Paola Causin , Alessio Marta