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Molecular phenotypes are important links between genomic information and organismic functions, fitness, and evolution. Complex phenotypes, which are also called quantitative traits, often depend on multiple genomic loci. Their evolution…

种群与进化 · 定量生物学 2015-06-12 Armita Nourmohammad , Stephan Schiffels , Michael Laessig

This paper develops a general data-driven approach to stochastic elastoplastic modelling that leverages atomistic simulation data directly rather than by fitting parameters. The approach is developed in the context of metallic glasses,…

统计力学 · 物理学 2024-10-02 Bin Xu , Zhao Wu , Jiayin Lu , Michael D. Shields , Chris H. Rycroft , Franz Bamer , Michael L. Falk

In this paper we introduce a novel approach to obtain the stored energy density of rubber-like materials directly from experimental data. The model is structure-based, in which the only assumption is the existence of an isotropic…

材料科学 · 物理学 2020-07-14 Victor Jesús Amores , José María Benítez , Francisco Javier Montáns

Epoxy resins are used extensively in composite materials for a wide range of engineering applications, including structural components of aircraft and spacecraft. The processing of fiber-reinforced epoxy composite structures requires…

Differentiating structural evolution from structural development or formation opens many avenues of research. The study particularly advances the chemical and physical sciences, material science, energy science, and chemical engineering. By…

材料科学 · 物理学 2025-12-30 Mubarak Ali

The paper provides a macro-microscopic coupled constitutive model for fluid-saturated porous media with respect to the compressibility of the solid skeleton, the real solid material and the fluid phase. The derivation of the model is…

地球物理 · 物理学 2022-04-27 Jia-Yu Liang , Yue-Ming Li , Erich Bauer

In this article, we study a thermodynamically consistent thermo-visco-elastic model describing the balance of internal energy in a heat-conducting inelastic body. In the considered problem, the temperature dependence appears in both the…

偏微分方程分析 · 数学 2025-11-13 Tomasz Cieślak , Sebastian Owczarek , Karolina Wielgos

We present a numerical Monte Carlo analysis of a continuos spin Ising chain that can describe the statistical proterties of folded proteins. We find that depending on the value of the Metropolis temperature, the model displays the three…

统计力学 · 物理学 2011-02-01 M. N. Chernodub , Martin Lundgren , Antti J. Niemi

We derive a class of thermodynamically consistent variants of Maxwell/Oldroyd-B type models for viscoelastic fluids. In particular, we study the models that allow one to consider temperature dependent material coefficients. This naturally…

流体动力学 · 物理学 2017-07-12 Jaroslav Hron , Vojtěch Miloš , Vít Průša , Ondřej Souček , Karel Tůma

Aging in Caenorhabditis elegans is controlled, in part, by the insulin-like signaling and heat shock response pathways. Following thermal stress, expression levels of small heat shock protein 16.2 show a spatial patterning across the 20…

分子网络 · 定量生物学 2017-06-13 J. M. Wentz , A. Mendenhall , D. M. Bortz

Mechanochemical models of pattern formation in biological tissues have been used to study a variety of biomedical systems and describe the physical interactions between cells and their local surroundings. These models generally consist of a…

组织与器官 · 定量生物学 2021-05-12 Chiara Villa , Mark A. J. Chaplain , Alf Gerisch , Tommaso Lorenzi

We show that neural networks trained by evolutionary reinforcement learning can enact efficient molecular self-assembly protocols. Presented with molecular simulation trajectories, networks learn to change temperature and chemical potential…

统计力学 · 物理学 2020-06-01 Stephen Whitelam , Isaac Tamblyn

Prediction of stable crystal structures at given pressure-temperature conditions, based only on the knowledge of the chemical composition, is a central problem of condensed matter physics. This extremely challenging problem is often termed…

材料科学 · 物理学 2015-05-20 A. R. Oganov , Y. Ma , A. O. Lyakhov , M. Valle , C. Gatti

We numerically study thermodynamic and structural properties of the one-component Gaussian core model (GCM) at very high densities. The solid-fluid phase boundary is carefully determined. We find that the density dependence of both the…

软凝聚态物质 · 物理学 2015-05-27 Atsushi Ikeda , Kunimasa Miyazaki

We consider a mathematical model for the evolutionary dynamics of tumour cells in vascularised tumours under chemotherapy. The model comprises a system of coupled partial integro-differential equations for the phenotypic distribution of…

组织与器官 · 定量生物学 2020-06-02 Chiara Villa , Mark A. J. Chaplain , Tommaso Lorenzi

We propose a method to accurately and efficiently identify the constitutive behavior of complex materials through full-field observations. We formulate the problem of inferring constitutive relations from experiments as an indirect inverse…

材料科学 · 物理学 2024-12-05 Andrew Akerson , Aakila Rajan , Kaushik Bhattacharya

Polymerization and formation of crosslinked polymer networks are important processes in manufacturing, materials fabrication, and in the case of hydrated polymer networks, synthesis of biomedical materials, drug delivery, and tissue…

软凝聚态物质 · 物理学 2022-12-15 Sam C. P. Norris , Andrea M. Kasko , Tom Chou , Maria R. D'Orsogna

We have measured the nonlinear rheological response of a model transient network over a large range of steady shear rates. The system is built up from an oil in water droplet microemulsion into which a telechelic polymer is incorporated.…

软凝聚态物质 · 物理学 2009-11-10 Eric Michel , Jacqueline Appell , Francois Molino , Jean Kieffer , Gregoire Porte

We present neural network-based constitutive models for hyperelastic geometrically exact beams. The proposed models are physics-augmented, i.e., formulated to fulfill important mechanical conditions by construction, which improves accuracy…

计算工程、金融与科学 · 计算机科学 2024-12-20 Jasper O. Schommartz , Dominik K. Klein , Juan C. Alzate Cobo , Oliver Weeger

How adaptive evolution to one environmental stress improves or suppresses adaptation to another is an important problem in evolutionary biology. For instance, in microbiology, the evolution of bacteria to be resistant to different…

种群与进化 · 定量生物学 2023-02-23 Takuya U. Sato , Chikara Furusawa , Kunihiko Kaneko