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In molecular simulations, neural network force fields aim at achieving \emph{ab initio} accuracy with reduced computational cost. This work introduces enhancements to the Deep Potential network architecture, integrating a message-passing…

计算物理 · 物理学 2024-04-09 Ruiqi Gao , Yifan Li , Roberto Car

Nano-scale fluid transport has vast applications spanning from water desalination to biotechnology [1,2]. It is possible to pump fluids in nano-conduits using pressure gradients [3], thermal methods [4], electric [5,6] and magnetic fields…

介观与纳米尺度物理 · 物理学 2019-01-09 Yigit Akkus , Ali Beskok

Asymmetric behaviors of capacitance and charging dynamics in the cathode and anode are general for nanoporous supercapacitors. Understanding this behavior is essential for the optimal design of supercapacitors. Herein, we perform…

化学物理 · 物理学 2021-05-06 Tangming Mo , Liang Zeng , Zhenxiang Wang , Svyatoslav Kondrat , Guang Feng

We use a coarse-grained molecular dynamics simulation to investigate the interaction between neutral or charged nanoparticles (NPs) and a vesicle consisting of neutral and negatively charged lipids. We focus on the interaction strengths of…

软凝聚态物质 · 物理学 2019-07-25 Naofumi Shimokawa , Hiroaki Ito , Yuji Higuchi

Continuum simulation is employed to study ion transport and fluid flow through a nanopore in a solid-state membrane under an applied potential drop. Results show the existence of concentration polarization layers on the surfaces of the…

流体动力学 · 物理学 2015-06-16 Mao Mao , Sandip Ghosal , Guohui Hu

Computer simulation is an important tool for scientific progress, especially when lab experiments are either extremely costly and difficult or lack the required resolution. However, all of the simulation methods come with limitations. In…

流体动力学 · 物理学 2023-08-04 Edward R. Smith , Panagiotis E. Theodorakis

Preparing and observing quantum states of nanoscale particles is a challenging task with great relevance for quantum technologies and tests of fundamental physics. In contrast to atomic systems with discrete transitions, nanoparticles…

量子物理 · 物理学 2020-12-23 Lukas Martinetz , Klaus Hornberger , James Millen , M. S. Kim , Benjamin A. Stickler

In a multiscale modeling approach, we present computer simulation results for a rectifying bipolar nanopore on two modeling levels. In an all-atom model, we use explicit water to simulate ion transport directly with the molecular dynamics…

介观与纳米尺度物理 · 物理学 2018-03-13 Zoltán Ható , Mónika Valiskó , Tamás Kristóf , Dirk Gillespie , Dezső Boda

Creating accurate, analytic atom--atom potentials for small organic molecules from first principles can be a time-consuming and computationally intensive task, particularly if we also require them to include explicit polarization terms,…

原子物理 · 物理学 2016-06-02 Alston J. Misquitta , Anthony J. Stone

The mechanical properties of PC12 living cells have been studied at the nanoscale with a Force Feedback Microscope using two experimental approaches. Firstly, the local mechanical impedance of the cell membrane has been mapped…

The motion of charged particles can be interfaced with electric circuitry via the current induced in nearby pick-up electrodes. Here we show how the rotational and translational dynamics of levitated objects with arbitrary charge…

量子物理 · 物理学 2021-10-11 Lukas Martinetz , Klaus Hornberger , Benjamin A. Stickler

A major challenge in modelling interfacial processes in electrochemical (EC) devices is performing simulations at constant potential. This requires an open-boundary description of the electrons, so that they can enter and leave the…

化学物理 · 物理学 2023-11-07 Margherita Buraschi , Andrew P. Horsfield , Clotilde S. Cucinotta

A comprehensive description of molecular electron transfer reactions is essential for our understanding of fundamental phenomena in bio-energetics and molecular electronics. Experimental studies of molecular systems in condensed-phase…

Molecular simulations of the forced unfolding and refolding of biomolecules or molecular complexes allow to gain important kinetic, structural and thermodynamic information about the folding process and the underlying energy landscape. In…

软凝聚态物质 · 物理学 2021-05-26 Marco Oestereich , Jürgen Gauss , Gregor Diezemann

Reversible bipolar nano-switches that can be set and read electronically in a solid-state two-terminal device are very promising for applications. We have performed molecular-dynamics simulations that mimic systems with oxygen vacancies…

介观与纳米尺度物理 · 物理学 2015-05-20 S. E. Savel'ev , A. S. Alexandrov , A. M. Bratkovsky , R. Stanley Williams

Molecular dynamics simulations have been performed on pure liquid water, aqueous solutions of sodium chloride, and polymer solutions exposed to a strong external electric field with the goal to gain molecular insight into the structural…

软凝聚态物质 · 物理学 2016-08-08 I. Nezbeda , J. Jirsák , F. Moučka , W. R. Smith

Continuum solvation models are becoming increasingly relevant in condensed matter simulations, allowing to characterize materials interfaces in the presence of wet electrified environments at a reduced computational cost with respect to all…

计算物理 · 物理学 2023-08-16 Gabriel Medrano , Edan Bainglass , Oliviero Andreussi

Local electrochemical measurements and imaging at the nanoscale are crucial for the future development of molecular devices, sensors, materials engineering, electrophysiology and various energy applications from artificial photosynthesis to…

Aerosol injectors applied in single-particle diffractive imaging experiments demonstrated their potential in efficiently delivering nanoparticles with high density. Continuous optimization of injector design is crucial for achieving…

Ring polymer molecular dynamics (RPMD) is used to directly simulate the dynamics of an excess electron in a supercritical fluid over a broad range of densities. The accuracy of the RPMD model is tested against numerically exact path…

统计力学 · 物理学 2011-07-27 Thomas F. Miller