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The human-associated microbiome is closely tied to human health and is of substantial clinical interest. Metagenomics-based tools are emerging for clinical diagnostics, tracking the spread of diseases, and surveillance of potential…

Image processing has always been a topic of significant importance to society. Recently, this field has gained considerable prominence due to the development of intelligent systems. In this work, we present a new method of image processing…

数据分析、统计与概率 · 物理学 2024-12-25 Monalisa Cavalcante , José Araújo , José Holanda

Automatic image-based food recognition is a particularly challenging task. Traditional image analysis approaches have achieved low classification accuracy in the past, whereas deep learning approaches enabled the identification of food…

计算机视觉与模式识别 · 计算机科学 2020-04-09 Chairi Kiourt , George Pavlidis , Stella Markantonatou

The marine microbial food web plays a central role in the global carbon cycle. Our mechanistic understanding of the ocean, however, is biased towards its larger constituents, while rates and biomass fluxes in the microbial food web are…

With the growth of artificial intelligence (AI), there has been an increase in the adoption of computer vision and deep learning (DL) techniques for the evaluation of microscopy images and movies. This adoption has not only addressed…

定量方法 · 定量生物学 2023-07-21 Binghao Chai , Christoforos Efstathiou , Haoran Yue , Viji M. Draviam

Food is very essential for human life and it is fundamental to the human experience. Food-related study may support multifarious applications and services, such as guiding the human behavior, improving the human health and understanding the…

计算机与社会 · 计算机科学 2019-07-17 Weiqing Min , Shuqiang Jiang , Linhu Liu , Yong Rui , Ramesh Jain

Microarray is one of the essential technologies used by the biologist to measure genome-wide expression levels of genes in a particular organism under some particular conditions or stimuli. As microarrays technologies have become more…

人工智能 · 计算机科学 2020-05-05 Khalid Raza

High dimensional and heterogeneous count data are collected in various applied fields. In this paper, we look closely at high-resolution sequencing data on the microbiome, which have enabled researchers to study the genomes of entire…

统计方法学 · 统计学 2024-01-12 Veronica Vinciotti , Pariya Behrouzi , Reza Mohammadi

Segmentation, or the outlining of objects within images, is a critical step in the measurement and analysis of cells within microscopy images. While improvements continue to be made in tools that rely on classical methods for segmentation,…

定量方法 · 定量生物学 2024-03-15 Nodar Gogoberidze , Beth A. Cimini

Microalgae counting is used to measure biomass quantity. Usually, it is performed in a manual way using a Neubauer chamber and expert criterion, with the risk of a high error rate. This paper addresses the methodology for automatic…

Zebrafish share a high degree of homology with human genes and are commonly used as model organism in biomedical research. For medical laboratories, counting zebrafish is a daily task. Due to the tiny size of zebrafish, manual visual…

计算机视觉与模式识别 · 计算机科学 2025-04-21 Qianghua Chen , Huiyu Wang , Li Ming , Ying Zhao

Medical image fusion is the process of registering and combining multiple images from single or multiple imaging modalities to improve the imaging quality and reduce randomness and redundancy in order to increase the clinical applicability…

计算机视觉与模式识别 · 计算机科学 2014-01-03 A. P. James , B. V. Dasarathy

Imaging assays of cellular function, especially those using fluorescent stains, are ubiquitous in the biological and medical sciences. Despite advances in computer vision, such images are often analyzed using only manual or rudimentary…

计算机视觉与模式识别 · 计算机科学 2017-06-06 Lena R. Bartell , Lawrence J. Bonassar , Itai Cohen

Bacterial biofilms are among the oldest and most prevalent multicellular life forms on Earth and are increasingly relevant in research areas related to industrial fouling, medicine and biotechnology. The main hurdles to obtaining definitive…

Microbes are essentially yet convolutedly linked with human lives on the earth. They critically interfere in different physiological processes and thus influence overall health status. Studying microbial species is used to be constrained to…

基因组学 · 定量生物学 2021-09-03 Chao Yang , Debajyoti Chowdhury , Zhenmiao Zhang , William K. Cheung , Aiping Lu , Zhao Xiang Bian , Lu Zhang

The study of microorganisms, or microbiology, has demonstrated significant development since its inception and is currently a key field of biological sciences that has a huge impact on modern society and scientific research. Over the…

生物物理 · 物理学 2025-05-16 Daniil S. Gerassimov

Crop diseases are a major threat to food security, but their rapid identification remains difficult in many parts of the world due to the lack of the necessary infrastructure. The combination of increasing global smartphone penetration and…

计算机视觉与模式识别 · 计算机科学 2016-04-18 Sharada Prasanna Mohanty , David Hughes , Marcel Salathe

Counting plant organs such as heads or tassels from outdoor imagery is a popular benchmark computer vision task in plant phenotyping, which has been previously investigated in the literature using state-of-the-art supervised deep learning…

计算机视觉与模式识别 · 计算机科学 2020-07-21 Jordan Ubbens , Tewodros Ayalew , Steve Shirtliffe , Anique Josuttes , Curtis Pozniak , Ian Stavness

This paper reviewed the deep learning-based studies for medical imaging synthesis and its clinical application. Specifically, we summarized the recent developments of deep learning-based methods in inter- and intra-modality image synthesis…

医学物理 · 物理学 2020-04-23 Tonghe Wang , Yang Lei , Yabo Fu , Walter J. Curran , Tian Liu , Xiaofeng Yang

The application of machine learning to radiological images is an increasingly active research area that is expected to grow in the next five to ten years. Recent advances in machine learning have the potential to recognize and classify…

图像与视频处理 · 电气工程与系统科学 2019-04-01 Zhenwei Zhang , Ervin Sejdic