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The improved in-vitro regulation of human embryonic stem cell (hESC) pluripotency and differentiation trajectories is required for their promising clinical applications. The temporal and spatial quantification of the molecular interactions…

Human pluripotent stem cells hold great promise for developments in regenerative medicine and drug design. The mathematical modelling of stem cells and their properties is necessary to understand and quantify key behaviours and develop…

细胞行为 · 定量生物学 2019-09-24 L E Wadkin , S Orozco-Fuentes , I Neganova , M Lako , A Shukurov , N G Parker

Statistical and mathematical modeling are crucial to describe, interpret, compare and predict the behavior of complex biological systems including the organization of hematopoietic stem and progenitor cells in the bone marrow environment.…

定量方法 · 定量生物学 2018-09-07 Walter de Back , Thomas Zerjatke , Ingo Roeder

The aim of this chapter is to convey the importance and usefulness of mathematical modelling as a tool to achieve a deeper understanding of stem cell biology. We introduce key mathematical concepts (random walk theory, differential…

A quantum model on the chemically and physically induced pluripotency in stem cells is proposed. Based on the conformational Hamiltonian and the idea of slow variables (molecular torsions) slaving fast ones the conversion from the…

其他定量生物学 · 定量生物学 2015-01-07 Liaofu Luo

We propose a modelling framework to analyse the stochastic behaviour of heterogeneous, multi-scale cellular populations. We illustrate our methodology with a particular example in which we study a population with an oxygen-regulated…

生物物理 · 物理学 2017-09-01 Roberto de la Cruz , Pilar Guerrero , Fabian Spill , Tomás Alarcón

Pluripotent embryonic stem cells are of paramount importance for biomedical research thanks to their innate ability for self-renewal and differentiation into all major cell lines. The fateful decision to exit or remain in the pluripotent…

分子网络 · 定量生物学 2018-07-04 Yen Ting Lin , Peter G. Hufton , Esther J. Lee , Davit A. Potoyan

A quantum model on the chemically and physically induced pluripotency in stem cells is proposed. Based on the conformational Hamiltonian and the idea of slow variables (molecular torsions) slaving fast ones the conversion from the…

生物大分子 · 定量生物学 2015-06-09 Liaofu Luo

We construct a model of cell reprogramming (the conversion of fully differentiated cells to a state of pluripotency, known as induced pluripotent stem cells, or iPSCs) which builds on key elements of cell biology viz. cell cycles and cell…

细胞行为 · 定量生物学 2017-09-25 R Hannam , A Annibale , R Kuehn

Characterization of pluripotent states, in which cells can both self-renew and differentiate, and the irreversible loss of pluripotency are important research areas in developmental biology. In particular, an understanding of these…

分子网络 · 定量生物学 2015-09-02 Tadashi Miyamoto , Chikara Furusawa , Kunihiko Kaneko

How to induce differentiated cells into pluripotent cells has elicited researchers' interests for a long time since pluripotent stem cells are able to offer remarkable potential in numerous subfields of biological research. However, the…

分子网络 · 定量生物学 2014-12-09 Jiawei Yan , Pu Zheng , Xingjie Pan

This paper presents advancements in automated early-stage prediction of the success of reprogramming human induced pluripotent stem cells (iPSCs) as a potential source for regenerative cell therapies.The minuscule success rate of…

计算机视觉与模式识别 · 计算机科学 2023-11-14 Abhineet Singh , Ila Jasra , Omar Mouhammed , Nidheesh Dadheech , Nilanjan Ray , James Shapiro

Multicolor cell spatio-temporal image data have become important to investigate organ development and regeneration, malignant growth or immune responses by tracking different cell types both in vivo and in vitro. Statistical modeling of…

统计方法学 · 统计学 2018-04-11 Puxue Qiao , Christina Mølck , Davide Ferrari , Frédéric Hollande

The proper functioning of multicellular organisms requires the robust establishment of precise proportions between distinct cell-types. This developmental differentiation process typically involves intracellular regulatory and stochastic…

细胞行为 · 定量生物学 2016-06-22 Benjamin Pfeuty , Kunihiko Kaneko

This article is devoted to providing a review of mathematical formulations in which Polynomial Chaos Theory (PCT) has been incorporated into stochastic model predictive control (SMPC). In the past decade, PCT has been shown to provide a…

系统与控制 · 电气工程与系统科学 2024-06-18 Prabhat K. Mishra , Joel A. Paulson , Richard D. Braatz

Hematopoiesis is a complex biological process that leads to the production and regulation of blood cells. It is based upon differentiation of stem cells under the action of growth factors. A mathematical approach of this process is proposed…

经典分析与常微分方程 · 数学 2009-04-17 Mostafa Adimy , Fabien Crauste , Shigui Ruan

There is increasing interest in the analysis of biological tissue, its organization and its dynamics with the help of mathematical models. In the ideal case emergent properties on the tissue scale can be derived from the cellular scale.…

组织与器官 · 定量生物学 2009-11-13 Tilo Beyer , Michael Meyer-Hermann

The spatiotemporal coordination and regulation of cell proliferation is fundamental in many aspects of development and tissue maintenance. Cells have the ability to adapt their division rates in response to mechanical constraints, yet we do…

定量方法 · 定量生物学 2024-04-25 Carles Falcó , Daniel J. Cohen , José A. Carrillo , Ruth E. Baker

Mathematical models of living cells have been successively refined with advancements in experimental techniques. A main concern is striking a balance between modelling power and the tractability of the associated mathematical analysis. In…

分子网络 · 定量生物学 2025-05-20 Gesina Menz , Stefan Engblom

The dynamics of cellular pattern formation is crucial for understanding embryonic development and tissue morphogenesis. Recent studies have shown that human dermal fibroblasts cultured on liquid crystal elastomers can exhibit an increase in…

生物物理 · 物理学 2023-08-25 Mengyang Gu , Xinyi Fang , Yimin Luo
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