相关论文: Algorithms and Complexity on Indexing Founder Grap…

We study the classification problems over string data for hypotheses specified by formulas of monadic second-order logic MSO. The goal is to design learning algorithms that run in time polynomial in the size of the training set,…

This is my PhD thesis which was defended in May 2021. We call an induced cycle of length at least four a hole. The parity of a hole is the parity of its length. Forbidding holes of certain types in a graph has deep structural implications.…

Many networks in real-life typically contain parts in which some nodes are more highly connected to each other than the other nodes of the network. The collection of such nodes are usually called clusters, communities, cohesive groups or…

We propose an efficient algorithm for matching two correlated Erd\H{o}s--R\'enyi graphs with $n$ vertices whose edges are correlated through a latent vertex correspondence. When the edge density $q= n^{- \alpha+o(1)}$ for a constant $\alpha…

For a graph $H$, a graph $G$ is an $H$-graph if it is an intersection graph of connected subgraphs of some subdivision of $H$. $H$-graphs naturally generalize several important graph classes like interval or circular-arc graph. This class…

A matching in a graph is a set of edges no two of which share a common vertex. A matching M is an induced matching if no edge connects two edges of M. The problem of finding a maximum induced matching is known to be NP-hard in general and…

The aim of this thesis is to present an extension to the string graphs of Dixon, Duncan and Kissinger that allows the finite representation of certain infinite families of graphs and graph rewrite rules, and to demonstrate that a logic can…

Counting small patterns in a large dataset is a fundamental algorithmic task. The most common version of this task is subgraph/homomorphism counting, wherein we count the number of occurrences of a small pattern graph $H$ in an input graph…

It is confirmed in this work that the graph isomorphism can be tested in polynomial time, which resolves a longstanding problem in the theory of computation. The contributions are in three phases as follows. 1. A description graph…

The min-rank of a graph was introduced by Haemers (1978) to bound the Shannon capacity of a graph. This parameter of a graph has recently gained much more attention from the research community after the work of Bar-Yossef et al. (2006). In…

We introduce the concept of link-irregular labelings for graphs, extending the notion of link-irregular graphs through edge labeling with positive integers. A labeling is link-irregular if every vertex has a uniquely labeled subgraph…

We give an algorithmic and lower-bound framework that facilitates the construction of subexponential algorithms and matching conditional complexity bounds. It can be applied to intersection graphs of similarly-sized fat objects, yielding…

Inspired by artistic practices such as beadwork and himmeli, we study the problem of threading a single string through a set of tubes, so that pulling the string forms a desired graph. More precisely, given a connected graph (where edges…

In a node-labeled graph, keyword search finds subtrees of the graph whose nodes contain all of the query keywords. This provides a way to query graph databases that neither requires mastery of a query language such as SPARQL, nor a deep…

In this paper, motivated by a question posed in \cite{AH}, we introduce strongly biconvex graphs as a subclass of weakly chordal and bipartite graphs. We give a linear time algorithm to find an induced matching for such graphs and we prove…

We study the problem of finding maximal exact matches (MEMs) between a query string $Q$ and a labeled graph $G$. MEMs are an important class of seeds, often used in seed-chain-extend type of practical alignment methods because of their…

We present an algorithm that takes as input an $n$-vertex planar graph $G$ and a $k$-vertex pattern graph $P$, and computes the number of (induced) copies of $P$ in $G$ in $2^{O(k/\log k)}n^{O(1)}$ time. If $P$ is a matching, independent…

The generic homomorphism problem, which asks whether an input graph $G$ admits a homomorphism into a fixed target graph $H$, has been widely studied in the literature. In this article, we provide a fine-grained complexity classification of…

Given two graphs $G$ and $H$, we say that $G$ contains $H$ as an induced minor if a graph isomorphic to $H$ can be obtained from $G$ by a sequence of vertex deletions and edge contractions. We study the complexity of Graph Isomorphism on…

Finding patterns in graphs is a fundamental problem in databases and data mining. In many applications, graphs are temporal and evolve over time, so we are interested in finding durable patterns, such as triangles and paths, which persist…