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The surging amount of biomedical literature & digital clinical records presents a growing need for text mining techniques that can not only identify but also semantically relate entities in unstructured data. In this paper we propose a text…

计算与语言 · 计算机科学 2021-12-28 Hasham Ul Haq , Veysel Kocaman , David Talby

Named entity recognition (NER) of chemicals and drugs is a critical domain of information extraction in biochemical research. NER provides support for text mining in biochemical reactions, including entity relation extraction, attribute…

计算与语言 · 计算机科学 2020-12-22 Jian Liu , Lei Gao , Sujie Guo , Rui Ding , Xin Huang , Long Ye , Qinghua Meng , Asef Nazari , Dhananjay Thiruvady

Hypergraphs are characterized by complex topological structure, representing higher-order interactions among multiple entities through hyperedges. Lately, hypergraph-based deep learning methods to learn informative data representations for…

机器学习 · 计算机科学 2024-09-30 Adrián Bazaga , Pietro Liò , Gos Micklem

We propose a method for joint multichannel speech dereverberation with two spatial-aware tasks: direction-of-arrival (DOA) estimation and speech separation. The proposed method addresses involved tasks as a sequence to sequence mapping…

音频与语音处理 · 电气工程与系统科学 2020-10-23 Yang Jiao

We present simple BERT-based models for relation extraction and semantic role labeling. In recent years, state-of-the-art performance has been achieved using neural models by incorporating lexical and syntactic features such as…

计算与语言 · 计算机科学 2019-04-11 Peng Shi , Jimmy Lin

The Transformer architecture has gained growing attention in graph representation learning recently, as it naturally overcomes several limitations of graph neural networks (GNNs) by avoiding their strict structural inductive biases and…

机器学习 · 统计学 2022-06-14 Dexiong Chen , Leslie O'Bray , Karsten Borgwardt

Semantic similarity analysis and modeling is a fundamentally acclaimed task in many pioneering applications of natural language processing today. Owing to the sensation of sequential pattern recognition, many neural networks like RNNs and…

计算与语言 · 计算机科学 2023-06-27 Praneeth Nemani , Satyanarayana Vollala

Multiple neural language models have been developed recently, e.g., BERT and XLNet, and achieved impressive results in various NLP tasks including sentence classification, question answering and document ranking. In this paper, we explore…

信息检索 · 计算机科学 2020-04-29 Zhuolin Jiang , Amro El-Jaroudi , William Hartmann , Damianos Karakos , Lingjun Zhao

Objective: Clinical knowledge enriched transformer models (e.g., ClinicalBERT) have state-of-the-art results on clinical NLP (natural language processing) tasks. One of the core limitations of these transformer models is the substantial…

计算与语言 · 计算机科学 2023-01-30 Yikuan Li , Ramsey M. Wehbe , Faraz S. Ahmad , Hanyin Wang , Yuan Luo

Impressive performance of Transformer has been attributed to self-attention, where dependencies between entire input in a sequence are considered at every position. In this work, we reform the neural $n$-gram model, which focuses on only…

计算与语言 · 计算机科学 2022-07-28 Mengsay Loem , Sho Takase , Masahiro Kaneko , Naoaki Okazaki

In recent years, with the growing amount of biomedical documents, coupled with advancement in natural language processing algorithms, the research on biomedical named entity recognition (BioNER) has increased exponentially. However, BioNER…

计算与语言 · 计算机科学 2020-09-22 Usman Naseem , Matloob Khushi , Vinay Reddy , Sakthivel Rajendran , Imran Razzak , Jinman Kim

We present a novel framework to deal with relation extraction tasks in cases where there is complete lack of supervision, either in the form of gold annotations, or relations from a knowledge base. Our approach leverages syntactic parsing…

机器学习 · 计算机科学 2019-11-04 Yannis Papanikolaou , Ian Roberts , Andrea Pierleoni

Relation extraction (RE) has recently moved from the sentence-level to document-level, which requires aggregating document information and using entities and mentions for reasoning. Existing works put entity nodes and mention nodes with…

计算与语言 · 计算机科学 2023-03-08 Hongfei Liu , Zhao Kang , Lizong Zhang , Ling Tian , Fujun Hua

Query understanding plays a key role in exploring users' search intents and facilitating users to locate their most desired information. However, it is inherently challenging since it needs to capture semantic information from short and…

信息检索 · 计算机科学 2023-11-20 Juanhui Li , Yao Ma , Wei Zeng , Suqi Cheng , Jiliang Tang , Shuaiqiang Wang , Dawei Yin

Transformer-based pre-trained models have gained much advance in recent years, becoming one of the most important backbones in natural language processing. Recent work shows that the attention mechanism inside Transformer may not be…

计算与语言 · 计算机科学 2022-10-27 Yile Wang , Linyi Yang , Zhiyang Teng , Ming Zhou , Yue Zhang

Automatically extracting the relationships between chemicals and diseases is significantly important to various areas of biomedical research and health care. Biomedical experts have built many large-scale knowledge bases (KBs) to advance…

计算与语言 · 计算机科学 2019-12-24 Huiwei Zhou , Yunlong Yang , Shixian Ning , Zhuang Liu , Chengkun Lang , Yingyu Lin , Degen Huang

Information Retrieval (IR) is the task of obtaining pieces of data (such as documents) that are relevant to a particular query or need from a large repository of information. IR is a valuable component of several downstream Natural Language…

信息检索 · 计算机科学 2020-08-05 Samarth Rawal

Clinical notes contain an extensive record of a patient's health status, such as smoking status or the presence of heart conditions. However, this detail is not replicated within the structured data of electronic health systems.…

计算与语言 · 计算机科学 2020-09-18 Andriy Mulyar , Elliot Schumacher , Masoud Rouhizadeh , Mark Dredze

In this work, we represent Lex-BERT, which incorporates the lexicon information into Chinese BERT for named entity recognition (NER) tasks in a natural manner. Instead of using word embeddings and a newly designed transformer layer as in…

计算与语言 · 计算机科学 2021-04-19 Wei Zhu , Daniel Cheung

The goal of text ranking is to generate an ordered list of texts retrieved from a corpus in response to a query. Although the most common formulation of text ranking is search, instances of the task can also be found in many natural…

信息检索 · 计算机科学 2021-08-20 Jimmy Lin , Rodrigo Nogueira , Andrew Yates
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