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Hawkes stochastic point process models have emerged as valuable statistical tools for analyzing viral contagion. The spatiotemporal Hawkes process characterizes the speeds at which viruses spread within human populations. Unfortunately,…

统计计算 · 统计学 2024-07-17 Seyoon Ko , Marc A. Suchard , Andrew J. Holbrook

Simulation-based Inference (SBI) is a widely used set of algorithms to learn the parameters of complex scientific simulation models. While primarily run on CPUs in HPC clusters, these algorithms have been shown to scale in performance when…

分布式、并行与集群计算 · 计算机科学 2021-06-30 Sourabh Kulkarni , Csaba Andras Moritz

Deploying deep neural networks on mobile devices is increasingly important but remains challenging due to limited computing resources. On the other hand, their unified memory architecture and narrower gap between CPU and GPU performance…

机器学习 · 计算机科学 2026-02-20 Zhuojin Li , Marco Paolieri , Leana Golubchik

Technological advances in the past decade, hardware and software alike, have made access to high-performance computing (HPC) easier than ever. We review these advances from a statistical computing perspective. Cloud computing makes access…

统计计算 · 统计学 2021-07-19 Seyoon Ko , Hua Zhou , Jin J. Zhou , Joong-Ho Won

As opportunities for AI-assisted healthcare grow steadily, model deployment faces challenges due to the specific characteristics of the industry. The configuration choice for a production device can impact model performance while…

分布式、并行与集群计算 · 计算机科学 2019-10-09 Dibyajyoti Pati , Caroline Favart , Purujit Bahl , Vivek Soni , Yun-chan Tsai , Michael Potter , Jiahui Guan , Xiaomeng Dong , V. Ratna Saripalli

Despite the widespread testing protocols for COVID-19, there are still significant challenges in early detection of the disease, which is crucial for preventing its spread and optimizing patient outcomes. Owing to the limited testing…

机器学习 · 计算机科学 2023-12-13 Moyosolu Akinloye

Approximate Bayesian Computation (ABC) is a family of statistical inference techniques, which is increasingly used in biology and other scientific fields. Its main benefit is to be applicable to models for which the computation of the model…

定量方法 · 定量生物学 2014-12-25 Franck Jabot , Guillaume Lagarrigues , Benoît Courbaud , Nicolas Dumoulin

The Cox proportional hazards model stands as a widely-used semi-parametric approach for survival analysis in medical research and many other fields. Numerous extensions of the Cox model have further expanded its versatility. Statistical…

统计计算 · 统计学 2023-10-26 Jianxiao Yang , Martijn J. Schuemie , Marc A. Suchard

In this paper, we propose a realistic mathematical model taking into account the mutual interference among the interacting populations. This model attempts to describe the control (vaccination) function as a function of the number of…

神经与进化计算 · 计算机科学 2016-11-18 V. Sree Hari Rao , M. Naresh Kumar

An epidemiological model for COVID-19 was developed and implemented in MATLAB/GNU Octave for use by public health practitioners, policy makers and the general public. The model distinguishes four stages in the disease: infected, sick,…

种群与进化 · 定量生物学 2020-03-24 Alex De Visscher

The realized stochastic volatility (RSV) model that utilizes the realized volatility as additional information has been proposed to infer volatility of financial time series. We consider the Bayesian inference of the RSV model by the Hybrid…

计算金融 · 定量金融 2016-11-28 Tetsuya Takaishi

As exascale systems reach unprecedented concurrency, traditional performance analysis tools struggle with the overhead of massive-scale telemetry. We present an accelerated infrastructure for the hpcanalysis framework that leverages a…

分布式、并行与集群计算 · 计算机科学 2026-05-12 Dragana Grbic

The performance of the Hybrid Monte Carlo algorithm is determined by the speed of sparse matrix-vector multiplication within the context of preconditioned conjugate gradient iteration. We study these operations as implemented for the…

统计力学 · 物理学 2016-08-14 Kyle A. Wendt , Joaquín E. Drut , Timo A. Lähde

Discrete optimization is a central problem in artificial intelligence. The optimization of the aggregated cost of a network of cost functions arises in a variety of problems including (W)CSP, DCOP, as well as optimization in stochastic…

人工智能 · 计算机科学 2018-01-12 Ferdinando Fioretto , Enrico Pontelli , William Yeoh , Rina Dechter

We describe a computational framework for hierarchical Bayesian inference with simple (typically single-plate) parametric graphical models that uses graphics processing units (GPUs) to accelerate computations, enabling deployment on very…

天体物理仪器与方法 · 物理学 2021-05-18 János M. Szalai-Gindl , Thomas J. Loredo , Brandon C. Kelly , István Csabai , Tamás Budavári , László Dobos

Parallel computing using accelerators has gained widespread research attention in the past few years. In particular, using GPUs for general purpose computing has brought forth several success stories with respect to time taken, cost, power,…

We demonstrate a GPU-accelerated nested sampling framework for efficient high-dimensional Bayesian inference in cosmology. Using JAX-based neural emulators and likelihoods for cosmic microwave background and cosmic shear analyses, our…

宇宙学与河外天体物理 · 物理学 2025-10-08 Toby Lovick , David Yallup , Davide Piras , Alessio Spurio Mancini , Will Handley

We present a computational modeling framework for data-driven simulations and analysis of infectious disease spread in large populations. For the purpose of efficient simulations, we devise a parallel solution algorithm targeting…

种群与进化 · 定量生物学 2018-02-19 Pavol Bauer , Stefan Engblom , Stefan Widgren

The COVID-19 pandemic has highlighted the importance of in-silico epidemiological modelling in predicting the dynamics of infectious diseases to inform health policy and decision makers about suitable prevention and containment strategies.…

Non-Markovian (renewal) epidemic simulation on multi-million-node contact networks is essential for realistic forecasting under general age-dependent holding-time distributions (log-normal, Weibull, Erlang, and similar), but the…

分布式、并行与集群计算 · 计算机科学 2026-05-01 Heman Shakeri , Behnaz Moradi-Jamei , Aram Vajdi , Ehsan Ardjmand
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