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Multiple sequence alignment (MSA) has been one of the most important problems in bioinformatics for more decades and it is still heavily examined by many mathematicians and biologists. However, mostly because of the practical motivation of…

定量方法 · 定量生物学 2015-11-17 Kristóf Takács

Best and Brouwer [Discrete Math. 17 (1977), 235-245] proved that triply-shortened and doubly-shortened binary Hamming codes (which have length $2^m-4$ and $2^m-3$, respectively) are optimal. Properties of such codes are here studied,…

信息论 · 计算机科学 2011-10-10 Denis S. Krotov , Patric R. J. Östergård , Olli Pottonen

We provide a randomized linear time approximation scheme for a generic problem about clustering of binary vectors subject to additional constrains. The new constrained clustering problem encompasses a number of problems and by solving it,…

数据结构与算法 · 计算机科学 2018-07-20 Fedor V. Fomin , Petr A. Golovach , Daniel Lokshtanov , Fahad Panolan , Saket Saurabh

All codes with minimum distance 8 and codimension up to 14 and all codes with minimum distance 10 and codimension up to 18 are classified. Nonexistence of codes with parameters [33,18,8] and [33,14,10] is proved. This leads to 8 new exact…

信息论 · 计算机科学 2016-11-18 Iliya Bouyukliev , Erik Jakobsson

Binary sequences with lower autocorrelation values have important applications in cryptography and communications. In this paper, we present all possible parameters for binary periodical sequences with a 2-level autocorrelation values. For…

组合数学 · 数学 2018-04-12 X. Niu , H. Cao , K. Feng

By means of a binary visibility graph, we present a novel method to study random binary sequences. The behavior of the some topological properties of the binary visibility graph, such as the degree distribution, the clustering coefficient,…

混沌动力学 · 物理学 2010-04-14 S. Ahadpour , Y. Sadra

A class of binary sequences with period $2p$ is constructed using generalized cyclotomic classes, and their linear complexity, minimal polynomial over ${\mathbb{F}_{{q}}}$ as well as 2-adic complexity are determined using Gauss period and…

信息论 · 计算机科学 2021-09-10 Yan Wang , Xilin Han , Weiqiong Wang , Ziling Heng

We study the tandem duplication distance between binary sequences and their roots. In other words, the quantity of interest is the number of tandem duplication operations of the form $\seq x = \seq a \seq b \seq c \to \seq y = \seq a \seq b…

信息论 · 计算机科学 2016-11-18 Noga Alon , Jehoshua Bruck , Farzad Farnoud , Siddharth Jain

Low-discrepancy sequences have seen widespread adoption in computer graphics thanks to their superior convergence rates. Since rendering integrals often comprise products of lower-dimensional integrals, recent work has focused on developing…

图形学 · 计算机科学 2025-05-28 Abdalla G. M. Ahmed , Matt Pharr , Victor Ostromoukhov , Hui Huang

This study develops a graph search algorithm to find the optimal discrimination path for the binary classification problem. The objective function is defined as the difference of variations between the true positive (TP) and false positive…

机器学习 · 计算机科学 2024-01-10 Qinwu Xu

Low Autocorrelation Binary Sequences (LABS) is a particularly challenging binary optimization problem which quickly becomes intractable in finding the global optimum for problem sizes beyond 66. This aspect makes LABS appealing to use as a…

分布式、并行与集群计算 · 计算机科学 2025-08-18 Zhiwei Zhang , Jiayu Shen , Niraj Kumar , Marco Pistoia

The search for continuous gravitational waves demands computationally efficient algorithms that can handle highly non-linear parameter spaces. Loosely coherent algorithms establish upper limits and detect signals by analyzing families of…

天体物理仪器与方法 · 物理学 2019-01-04 Vladimir Dergachev

This paper describes a method to efficiently retrieve protein database sequences similar to a query sequence, while allowing for significant numbers of mutations. We call this method SEQR for SEQuence Retrieval. This approach increases the…

基因组学 · 定量生物学 2018-11-05 David I. Hurwitz , Lianyi Han , Lewis Y. Geer

Via interleaving Ding-Helleseth-Lam sequences, a class of binary sequences of period $4p$ with optimal autocorrelation magnitude was constructed in \cite{W. Su}. Later, Fan showed that the linear complexity of this class of sequences is…

信息论 · 计算机科学 2019-05-01 Minghui Yang , Lulu Zhang , Keqin Feng

We obtain a sharp upper bound for the length of arbitrary non-associative algebra and present an example demonstrating the sharpness of our bound. To show this we introduce a new method of characteristic sequences based on linear algebra…

组合数学 · 数学 2019-02-25 Alexander E. Guterman , Dmitrii K. Kudryavtsev

Kim et al. (2021) gave a method to embed a given binary $[n,k]$ code $\mathcal{C}$ $(k = 3, 4)$ into a self-orthogonal code of the shortest length which has the same dimension $k$ and minimum distance $d' \ge d(\mathcal{C})$. We extend this…

信息论 · 计算机科学 2022-06-28 Jon-Lark Kim , Whan-Hyuk Choi

The classical Fibonacci sequence is known to exhibit many fascinating properties. In this paper, we explore the Fibonacci sequence and integer sequences generated by second order linear recurrence relations with positive integer…

概率论 · 数学 2016-11-11 Arulalan Rajan , R. Vittal Rao , Ashok Rao , H. S. Jamadagni

In this paper, we study skew cyclic codes with arbitrary length over the ring $R=\mathbb{F}_{p}+u\mathbb{F}_{p}$ where $p$ is an odd prime and $% u^{2}=0$. We characterize all skew cyclic codes of length $n$ as left $% R[x;\theta…

信息论 · 计算机科学 2017-12-22 Reza Dastbasteh , Seyyed Hamed Mousavi , Taher Abualrub , Nuh Aydin , Javad Haghighat

Feature selection is popular for obtaining small, interpretable, yet highly accurate prediction models. Conventional feature-selection methods typically yield one feature set only, which might not suffice in some scenarios. For example,…

机器学习 · 计算机科学 2025-02-07 Jakob Bach

A heapable sequence is a sequence of numbers that can be arranged in a "min-heap data structure". Finding a longest heapable subsequence of a given sequence was proposed by Byers, Heeringa, Mitzenmacher, and Zervas (ANALCO 2011) as a…

数据结构与算法 · 计算机科学 2021-10-07 Karthekeyan Chandrasekaran , Elena Grigorescu , Gabriel Istrate , Shubhang Kulkarni , Young-San Lin , Minshen Zhu