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Domain adaptation is an effective solution to data scarcity in low-resource scenarios. However, when applied to token-level tasks such as bioNER, domain adaptation methods often suffer from the challenging linguistic characteristics that…

计算与语言 · 计算机科学 2022-11-14 Ngoc Dang Nguyen , Lan Du , Wray Buntine , Changyou Chen , Richard Beare

In the evolving field of Natural Language Processing (NLP), understanding the temporal context of text is increasingly critical for applications requiring advanced temporal reasoning. Traditional pre-trained language models like BERT, which…

计算与语言 · 计算机科学 2025-03-06 Jiexin Wang , Adam Jatowt , Yi Cai

Pre-trained language models such as BERT have exhibited remarkable performances in many tasks in natural language understanding (NLU). The tokens in the models are usually fine-grained in the sense that for languages like English they are…

计算与语言 · 计算机科学 2021-05-28 Xinsong Zhang , Pengshuai Li , Hang Li

BERT (Bidirectional Encoder Representations from Transformers) and ALBERT (A Lite BERT) are methods for pre-training language models which can later be fine-tuned for a variety of Natural Language Understanding tasks. These methods have…

计算与语言 · 计算机科学 2020-07-21 Diego de Vargas Feijo , Viviane Pereira Moreira

In biomedical natural language processing, named entity recognition (NER) and named entity normalization (NEN) are key tasks that enable the automatic extraction of biomedical entities (e.g. diseases and drugs) from the ever-growing…

计算与语言 · 计算机科学 2022-10-07 Mujeen Sung , Minbyul Jeong , Yonghwa Choi , Donghyeon Kim , Jinhyuk Lee , Jaewoo Kang

Obtaining large-scale annotated data for NLP tasks in the scientific domain is challenging and expensive. We release SciBERT, a pretrained language model based on BERT (Devlin et al., 2018) to address the lack of high-quality, large-scale…

计算与语言 · 计算机科学 2019-09-12 Iz Beltagy , Kyle Lo , Arman Cohan

Pretraining large neural language models, such as BERT, has led to impressive gains on many natural language processing (NLP) tasks. However, most pretraining efforts focus on general domain corpora, such as newswire and Web. A prevailing…

计算与语言 · 计算机科学 2021-09-20 Yu Gu , Robert Tinn , Hao Cheng , Michael Lucas , Naoto Usuyama , Xiaodong Liu , Tristan Naumann , Jianfeng Gao , Hoifung Poon

Named entity recognition (NER) is the process of recognising and classifying important information (entities) in text. Proper nouns, such as a person's name, an organization's name, or a location's name, are examples of entities. The NER is…

计算与语言 · 计算机科学 2023-02-28 Onkar Litake , Maithili Sabane , Parth Patil , Aparna Ranade , Raviraj Joshi

Named entity recognition (NER) is the very first step in the linguistic processing of any new domain. It is currently a common process in BioNLP on English clinical text. However, it is still in its infancy in other major languages, as it…

计算与语言 · 计算机科学 2019-12-20 Fernando Sánchez León , Ana González Ledesma

BERT, which stands for Bidirectional Encoder Representations from Transformers, is a recently introduced language representation model based upon the transfer learning paradigm. We extend its fine-tuning procedure to address one of its…

计算与语言 · 计算机科学 2019-10-25 Raghavendra Pappagari , Piotr Żelasko , Jesús Villalba , Yishay Carmiel , Najim Dehak

Recognizing spans of biomedical concepts and their types (e.g., drug or gene) in free text, often called biomedical named entity recognition (NER), is a basic component of information extraction (IE) pipelines. Without a strong NER…

计算与语言 · 计算机科学 2025-04-02 Motasem S Obeidat , Md Sultan Al Nahian , Ramakanth Kavuluru

Bidirectional Encoder Representations from Transformers (BERT) has shown marvelous improvements across various NLP tasks, and consecutive variants have been proposed to further improve the performance of the pre-trained language models. In…

计算与语言 · 计算机科学 2020-12-14 Yiming Cui , Wanxiang Che , Ting Liu , Bing Qin , Shijin Wang , Guoping Hu

Background: Transformer-based language models have shown strong performance on many Natural LanguageProcessing (NLP) tasks. Masked Language Models (MLMs) attract sustained interest because they can be adaptedto different languages and…

计算与语言 · 计算机科学 2024-04-01 Nesrine Bannour , Christophe Servan , Aurélie Névéol , Xavier Tannier

In this research, we explored the improvement in terms of multi-class disease classification via pre-trained language models over Medical-Abstracts-TC-Corpus that spans five medical conditions. We excluded non-cancer conditions and examined…

计算与语言 · 计算机科学 2024-11-20 Ahmed Akib Jawad Karim , Muhammad Zawad Mahmud , Samiha Islam , Aznur Azam

Recently, pretrained language models based on BERT have been introduced for the French biomedical domain. Although these models have achieved state-of-the-art results on biomedical and clinical NLP tasks, they are constrained by a limited…

计算与语言 · 计算机科学 2024-02-27 Adrien Bazoge , Emmanuel Morin , Beatrice Daille , Pierre-Antoine Gourraud

Language is an outcome of our complex and dynamic human-interactions and the technique of natural language processing (NLP) is hence built on human linguistic activities. Bidirectional Encoder Representations from Transformers (BERT) has…

计算与语言 · 计算机科学 2022-12-06 Katsuma Inoue , Soh Ohara , Yasuo Kuniyoshi , Kohei Nakajima

Recently, the bidirectional encoder representations from transformers (BERT) model has attracted much attention in the field of natural language processing, owing to its high performance in language understanding-related tasks. The BERT…

机器学习 · 计算机科学 2020-04-16 Kazuki Miyazawa , Tatsuya Aoki , Takato Horii , Takayuki Nagai

In recent years, pre-trained language models (PLMs) achieve the best performance on a wide range of natural language processing (NLP) tasks. While the first models were trained on general domain data, specialized ones have emerged to more…

Although rare diseases are characterized by low prevalence, approximately 300 million people are affected by a rare disease. The early and accurate diagnosis of these conditions is a major challenge for general practitioners, who do not…

计算与语言 · 计算机科学 2021-11-12 Isabel Segura-Bedmar , David Camino-Perdonas , Sara Guerrero-Aspizua

Biomedical question-answering (QA) has gained increased attention for its capability to provide users with high-quality information from a vast scientific literature. Although an increasing number of biomedical QA datasets has been recently…

计算与语言 · 计算机科学 2021-02-17 Gabriele Pergola , Elena Kochkina , Lin Gui , Maria Liakata , Yulan He