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Thanks to technological advances leading to near-continuous time observations, emerging multivariate point process data offer new opportunities for causal discovery. However, a key obstacle in achieving this goal is that many relevant…

机器学习 · 统计学 2021-12-15 Xu Wang , Ali Shojaie

Recent control trends are increasingly relying on communication networks and wireless channels to close the loop for Internet-of-Things applications. Traditionally these approaches are model-based, i.e., assuming a network or channel model…

系统与控制 · 电气工程与系统科学 2019-11-11 Konstantinos Gatsis , George J. Pappas

Link prediction is one of the fundamental problems in network analysis. In many applications, notably in genetics, a partially observed network may not contain any negative examples of absent edges, which creates a difficulty for many…

机器学习 · 统计学 2013-01-30 Yunpeng Zhao , Elizaveta Levina , Ji Zhu

A faithful description of the state of a complex dynamical network would require, in principle, the measurement of all its $d$ variables, an infeasible task for systems with practical limited access and composed of many nodes with high…

混沌动力学 · 物理学 2019-05-06 Christophe Letellier , Irene Sendiña-Nadal , Luis A. Aguirre

Chemical reaction networks describe interactions between biochemical species. Once an underlying reaction network is given for a biochemical system, the system dynamics can be modelled with various mathematical frameworks such as continuous…

概率论 · 数学 2023-06-22 German Enciso , Radek Erban , Jinsu Kim

Estimation of parameter sensitivities for stochastic chemical reaction networks is an important and challenging problem. Sensitivity values are important in the analysis, modeling and design of chemical networks. They help in understanding…

概率论 · 数学 2012-12-21 Ankit Gupta , Mustafa Khammash

Most empirical studies of networks assume that the network data we are given represent a complete and accurate picture of the nodes and edges in the system of interest, but in real-world situations this is rarely the case. More often the…

社会与信息网络 · 计算机科学 2019-01-02 M. E. J. Newman

The nonlinearities found in molecular networks usually prevent mathematical analysis of network behaviour, which has largely been studied by numerical simulation. This can lead to difficult problems of parameter determination. However,…

分子网络 · 定量生物学 2012-07-17 R. L. Karp , M. Pérez Millán , T. Dasgupta , A. Dickenstein , J. Gunawardena

The robustness of complex networks was one of the first phenomena studied after the inception of network science. However, many contemporary presentations of this theory do not go beyond the original papers. Here we revisit this topic with…

物理与社会 · 物理学 2022-02-17 Thilo Gross , Laura Barth

Neural networks demonstrate inherent vulnerability to small, non-random perturbations, emerging as adversarial attacks. Such attacks, born from the gradient of the loss function relative to the input, are discerned as input conjugates,…

机器学习 · 计算机科学 2024-02-20 Jun-Jie Zhang , Deyu Meng

Connectivity and controllability of a complex network are two important issues that guarantee a networked system to function. Robustness of connectivity and controllability guarantees the system to function properly and stably under various…

系统与控制 · 电气工程与系统科学 2022-10-04 Chengpei Wu , Yang Lou , Ruizi Wu , Wenwen Liu , Junli Li

The automated inference of physically interpretable (bio)chemical reaction network models from measured experimental data is a challenging problem whose solution has significant commercial and academic ramifications. It is demonstrated,…

神经与进化计算 · 计算机科学 2014-12-22 Dominic P. Searson , Mark J. Willis , Allen Wright

Chemical systems are interpreted through the species they contain and the reactions they may undergo, i.e., their chemical reaction network (CRN). In spite of their central importance to chemistry, the structure of CRNs continues to be…

统计力学 · 物理学 2025-06-17 Alex Blokhuis , Martijn van Kuppeveld , Daan van de Weem , Robert Pollice

We study stationary distributions in the context of stochastic reaction networks. In particular, we are interested in complex balanced reaction networks and reduction of such networks by assuming a set of species (called non-interacting…

概率论 · 数学 2024-02-06 Linard Hoessly , Carsten Wiuf , Panqiu Xia

In an increasingly connected world, the resilience of networked dynamical systems is important in the fields of ecology, economics, critical infrastructures, and organizational behaviour. Whilst we understand small-scale resilience well,…

适应与自组织系统 · 物理学 2018-08-21 Giannis Moutsinas , Weisi Guo

The issue of missing network links in partially observed networks is frequently neglected in empirical studies. This paper addresses this issue when investigating the spillovers of program benefits in the presence of network interactions.…

计量经济学 · 经济学 2024-08-16 Lina Zhang

This paper introduces the concept of Conjectural Link for Complex Networks, in particular, social networks. Conjectural Link we understand as an implicit link, not available in the network, but supposed to be present, based on the…

社会与信息网络 · 计算机科学 2016-08-03 A. A. Snarskii , D. I. Zorinets , D. V. Lande

Network analysis is often focused on characterizing the dependencies between network relations and node-level attributes. Potential relationships are typically explored by modeling the network as a function of the nodal attributes or by…

统计方法学 · 统计学 2013-06-21 Bailey K. Fosdick , Peter D. Hoff

Reliability on complex biological networks reconstructions remains a concern. Although observations are getting more and more precise, the data collection process is yet error prone and the proofs display uneven certitude. In the case of…

分子网络 · 定量生物学 2010-08-20 M. Ángeles Serrano , Francesc Sagués

In living cells, chemical reactions are connected by sharing their products and substrates, and form complex networks, e.g. metabolic pathways. Here we developed a theory to predict the sensitivity, i.e. the responses of concentrations and…

分子网络 · 定量生物学 2016-08-24 Takashi Okada , Atsushi Mochizuki