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Early detection and identification of pathogenic bacteria such as Escherichia coli (E. coli) is an essential task for public health. The conventional culture-based methods for bacterial colony detection usually take >24 hours to get the…

Colony-forming unit (CFU) detection is critical in pharmaceutical manufacturing, serving as a key component of Environmental Monitoring programs and ensuring compliance with stringent quality standards. Manual counting is labor-intensive…

计算机视觉与模式识别 · 计算机科学 2026-02-25 Subhra Jyoti Mandal , Lara Rachidi , Puneet Jain , Matthieu Duvinage , Sander W. Timmer

The spread of microbial infections is governed by the self-organization of bacteria on surfaces. Limitations of live imaging techniques make collective behaviors in clinically relevant systems challenging to quantify. Here, novel…

生物物理 · 物理学 2024-07-19 Vincent Hickl , Abid Khan , René M. Rossi , Bruno F. B. Silva , Katharina Maniura-Weber

Automated recognition and classification of bacteria species from microscopic images have significant importance in clinical microbiology. Bacteria classification is usually carried out manually by biologists using different shapes and…

定量方法 · 定量生物学 2019-12-19 Muhammed Talo

Automated bacterial colony counting from images is an important technique to obtain data required for the development of vaccines and antibiotics. However, bacterial colonies present unique machine vision challenges that affect counting,…

计算机视觉与模式识别 · 计算机科学 2026-04-23 Minghua Zheng , Na Helian , Peter C. R. Lane , Yi Sun , Allen Donald

Agriculture is vital for human survival and remains a major driver of several economies around the world; more so in underdeveloped and developing economies. With increasing demand for food and cash crops, due to a growing global population…

计算机视觉与模式识别 · 计算机科学 2018-11-21 Daniel K. Nkemelu , Daniel Omeiza , Nancy Lubalo

Machine learning has been an emerging tool for various aspects of infectious diseases including tuberculosis surveillance and detection. However, WHO provided no recommendations on using computer-aided tuberculosis detection software…

计算机视觉与模式识别 · 计算机科学 2020-08-04 Seelwan Sathitratanacheewin , Krit Pongpirul

Crop diseases present a significant barrier to agricultural productivity and global food security, especially in large-scale farming where early identification is often delayed or inaccurate. This research introduces a Convolutional Neural…

计算机视觉与模式识别 · 计算机科学 2025-07-15 Sourish Suri , Yifei Shao

The advent of deep learning has significantly propelled the capabilities of automated medical image diagnosis, providing valuable tools and resources in the realm of healthcare and medical diagnostics. This research delves into the…

图像与视频处理 · 电气工程与系统科学 2023-11-20 Ryan Donghan Kwon , Dohyun Lim , Yoonha Lee , Seung Won Lee

Counting cells in fluorescent microscopy is a tedious, time-consuming task that researchers have to accomplish to assess the effects of different experimental conditions on biological structures of interest. Although such objects are…

计算机视觉与模式识别 · 计算机科学 2021-03-02 R. Morelli , L. Clissa , M. Dalla , M. Luppi , L. Rinaldi , A. Zoccoli

Deep convolutional neural networks (CNNs) have outperformed existing object recognition and detection algorithms. On the other hand satellite imagery captures scenes that are diverse. This paper describes a deep learning approach that…

计算机视觉与模式识别 · 计算机科学 2017-05-15 Anza Shakeel , Mohsen Ali

Deep learning algorithms offer a powerful means to automatically analyze the content of medical images. However, many biological samples of interest are primarily transparent to visible light and contain features that are difficult to…

计算机视觉与模式识别 · 计算机科学 2017-09-22 Roarke Horstmeyer , Richard Y. Chen , Barbara Kappes , Benjamin Judkewitz

We present an application of the well-known Mask R-CNN approach to the counting of different types of bacterial colony forming units that were cultured in Petri dishes. Our model was made available to lab technicians in a modern SPA…

机器学习 · 计算机科学 2021-03-10 Tanguy Naets , Maarten Huijsmans , Paul Smyth , Laurent Sorber , Gaël de Lannoy

Diagnosis of fungal infections can rely on microscopic examination, however, in many cases, it does not allow unambiguous identification of the species due to their visual similarity. Therefore, it is usually necessary to use additional…

计算机视觉与模式识别 · 计算机科学 2020-10-14 Bartosz Zieliński , Agnieszka Sroka-Oleksiak , Dawid Rymarczyk , Adam Piekarczyk , Monika Brzychczy-Włoch

We use CNNs to build a system that both classifies images of faces based on a variety of different facial attributes and generates new faces given a set of desired facial characteristics. After introducing the problem and providing context…

计算机视觉与模式识别 · 计算机科学 2017-01-10 Hardie Cate , Fahim Dalvi , Zeshan Hussain

We propose a novel approach to enhance the discriminability of Convolutional Neural Networks (CNN). The key idea is to build a tree structure that could progressively learn fine-grained features to distinguish a subset of classes, by…

计算机视觉与模式识别 · 计算机科学 2017-09-25 Zhenhua Wang , Xingxing Wang , Gang Wang

Counting microbial colonies is a fundamental task in microbiology and has many applications in numerous industry branches. Despite this, current studies towards automatic microbial counting using artificial intelligence are hardly…

计算机视觉与模式识别 · 计算机科学 2022-09-07 Sylwia Majchrowska , Jarosław Pawłowski , Natalia Czerep , Aleksander Górecki , Jakub Kuciński , Tomasz Golan

Preliminary diagnosis of fungal infections can rely on microscopic examination. However, in many cases, it does not allow unambiguous identification of the species by microbiologist due to their visual similarity. Therefore, it is usually…

计算机视觉与模式识别 · 计算机科学 2020-09-09 Bartosz Zieliński , Agnieszka Sroka-Oleksiak , Dawid Rymarczyk , Adam Piekarczyk , Monika Brzychczy-Włoch

Compared to earlier multistage frameworks using CNN features, recent end-to-end deep approaches for fine-grained recognition essentially enhance the mid-level learning capability of CNNs. Previous approaches achieve this by introducing an…

计算机视觉与模式识别 · 计算机科学 2018-06-13 Yaming Wang , Vlad I. Morariu , Larry S. Davis

Identify the cells' nuclei is the important point for most medical analyses. To assist doctors finding the accurate cell' nuclei location automatically is highly demanded in the clinical practice. Recently, fully convolutional neural…

计算机视觉与模式识别 · 计算机科学 2019-11-25 Tianyang Zhang , Rui Ma
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