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An epidemiological model for COVID-19 was developed and implemented in MATLAB/GNU Octave for use by public health practitioners, policy makers and the general public. The model distinguishes four stages in the disease: infected, sick,…

种群与进化 · 定量生物学 2020-03-24 Alex De Visscher

Governments around the world have implemented preventive measures against the spread of the coronavirus disease (COVID-19). In this study, we consider a multivariate discrete-time Markov model to analyze the propagation of COVID-19 across…

种群与进化 · 定量生物学 2020-08-18 Tatsushi Oka , Wei Wei , Dan Zhu

Human to human transmissible infectious diseases spread in a population using human interactions as its transmission vector. The early stages of such an outbreak can be modeled by a graph whose edges encode these interactions between…

种群与进化 · 定量生物学 2020-06-11 Goncalo Oliveira

In Fall 2020, several European countries reported rapid increases in COVID-19 cases along with growing estimates of the effective reproduction rates. Such an acceleration in epidemic spread is usually attributed to time-dependent effects,…

种群与进化 · 定量生物学 2022-11-30 Nazmi Burak Budanur , Björn Hof

In this study, we propose a time-dependent Susceptible-Exposed-Infected-Recovered (SEIR) model for the analysis of the SARS-CoV-2 epidemic outbreak in three different countries, the United States of America, Italy and Iceland using public…

种群与进化 · 定量生物学 2021-11-08 P. Girardi , C. Gaetan

This research presents an advanced fractional-order compartmental model designed to delve into the complexities of COVID-19 transmission dynamics, specifically accounting for the influence of environmental pathogens on disease spread. By…

种群与进化 · 定量生物学 2024-07-09 Moein Khalighi , Faïçal Ndaïrou , Leo Lahti

We propose a general Bayesian approach to modeling epidemics such as COVID-19. The approach grew out of specific analyses conducted during the pandemic, in particular an analysis concerning the effects of non-pharmaceutical interventions…

应用统计 · 统计学 2021-01-01 Samir Bhatt , Neil Ferguson , Seth Flaxman , Axel Gandy , Swapnil Mishra , James A. Scott

The primary tool for predicting infectious disease spread and intervention effectiveness is the mass action Susceptible-Infected-Recovered model of Kermack and McKendrick. Its usefulness derives largely from its conceptual and mathematical…

种群与进化 · 定量生物学 2015-09-03 Joel C. Miller , Anja C. Slim , Erik M. Volz

The paper presents an algorithm for syndromic surveillance of an epidemic outbreak formulated in the context of stochastic nonlinear filtering. The dynamics of the epidemic is modeled using a generalized compartmental epidemiological model…

定量方法 · 定量生物学 2011-10-24 Alex Skvortsov , Branko Ristic

To model the evolution of diseases with extended latency periods and the presence of asymptomatic patients like COVID-19, we define a simple discrete time stochastic SIR-type epidemic model. We include both latent periods as well as the…

种群与进化 · 定量生物学 2020-05-14 Xavier Bardina , Marco Ferrante , Carles Rovira

This paper presents a detailed mathematical investigation into the dynamics of COVID-19 infections through extended Susceptible-Infected-Recovered (SIR) and Susceptible-Exposed-Infected-Recovered (SEIR) epidemiological models. By…

种群与进化 · 定量生物学 2025-05-21 Caleb Traxler , Minh Ton , Nameer Ahmed , Sasha Prostota , Annie Cheng

Background: The global spread of the severe acute respiratory syndrome (SARS) epidemic has clearly shown the importance of considering the long-range transportation networks in the understanding of emerging diseases outbreaks. The…

其他定量生物学 · 定量生物学 2008-01-16 Vittoria Colizza , Alain Barrat , Marc Barthelemy , Alessandro Vespignani

Dynamic networks exhibit temporal patterns that vary across different time scales, all of which can potentially affect processes that take place on the network. However, most data-driven approaches used to model time-varying networks…

物理与社会 · 物理学 2017-12-27 Tiago P. Peixoto , Laetitia Gauvin

We study the diffusion of epidemics on networks that are partitioned into local communities. The gross structure of hierarchical networks of this kind can be described by a quotient graph. The rationale of this approach is that individuals…

社会与信息网络 · 计算机科学 2016-01-19 Stefano Bonaccorsi , Stefania Ottaviano , Delio Mugnolo , Francesco De Pellegrini

This work aims to assess the risks of Covid-19 disease spread in diverse daily-life situations (referred to as scenarios) involving crowds of maskless pedestrians, mostly outdoors. More concretely, we develop a method to infer the global…

物理与社会 · 物理学 2021-11-04 Willy Garcia , Simon Mendez , Baptiste Fray , Alexandre Nicolas

There is increasing evidence that one of the most difficult problems in trying to control the ongoing COVID-19 epidemic is the presence of a large cohort of asymptomatic infectives. We develop a SIR-type model taking into account the…

种群与进化 · 定量生物学 2020-06-29 Giuseppe Gaeta

We propose to use the mean time between infections (MTBI) metric as obtained from a recently introduced non-homogeneous Markov stochastic model. Different types of parameter calibration are performed. We estimate the MTBI using data from…

种群与进化 · 定量生物学 2022-07-19 Gabriel Pena , Verónica Moreno , Nestor Barraza

The spread of the coronavirus (COVID-19), starting in late 2019, has determined in Italy several interventions aimed to prevent saturation of the health system. We have examined the effects of such measures by proposing a mean-field model…

物理与社会 · 物理学 2020-11-18 Corrado Spinella , Antonio Massimiliano Mio

The real-time analysis of infectious disease surveillance data, e.g., in the form of a time-series of reported cases or fatalities, is essential in obtaining situational awareness about the current dynamics of an adverse health event such…

统计方法学 · 统计学 2023-01-11 Fanny Bergström , Felix Günther , Michael Höhle , Tom Britton

We consider the SIR epidemiological model applied to the evolution of COVID-19 with two approaches. In the first place we fit a global SIR model, with time delay, and constant parameters throughout the outbreak, including the contagion…

种群与进化 · 定量生物学 2020-06-23 Nana Geraldine Cabo Bizet , Damián Kaloni Mayorga Peña