相关论文: On Extensions of Maximal Repeats in Compressed Str…
In this paper we show how to use one or more assembled or partially assembled genome as the basis for a compressed full-text index of its readset. Specifically, we build a labelled tree by taking the assembled genome as a trunk and grafting…
We develop techniques to compute higher loop string amplitudes for twisted $N=2$ theories with $\hat c=3$ (i.e. the critical case). An important ingredient is the discovery of an anomaly at every genus in decoupling of BRST trivial states,…
A binary string of length $2^k$ induces the Boolean function of $k$ variables whose Shannon expansion is the given binary string. This Boolean function then is representable via a unique reduced ordered binary decision diagram (ROBDD). The…
The repetition threshold for words on $n$ letters, denoted $\mbox{RT}(n)$, is the infimum of the set of all $r$ such that there are arbitrarily long $r$-free words over $n$ letters. A repetition threshold for circular words on $n$ letters…
In highly repetitive strings, like collections of genomes from the same species, distinct measures of repetition all grow sublinearly in the length of the text, and indexes targeted to such strings typically depend only on one of these…
The notion of string attractor has been introduced in [Kempa and Prezza, 2018] in the context of Data Compression and it represents a set of positions of a finite word in which all of its factors can be "attracted". The smallest size…
In today's data-centric world, fast and effective compression of data is paramount. To measure success towards the second goal, Kempa and Prezza [STOC2018] introduce the string attractor, a combinatorial object unifying dictionary-based…
In four spacetime dimensions there exist two off-shell formulations for the massless multiplet of superspin $(s+\frac 12)$, where $s=2,3, \dots$. These supersymmetric higher spin gauge theories, known as longitudinal and transverse, are…
Enumerating characteristic substrings (e.g., maximal repeats, minimal unique substrings, and minimal absent words) in a given string has been an important research topic because there are a wide variety of applications in various areas such…
We employ techniques from optimal transport in order to prove decay of transfer operators associated to iterated functions systems and expanding maps, giving rise to a new proof without requiring a Doeblin-Fortet (or Lasota-Yorke)…
This paper investigates the relationships between closed and mixed string amplitudes at the tree level in string theory. Through the analytic continuation of complex variables, we establish a factorization of closed string amplitudes into…
Lossless data compression has been widely studied in computer science. One of the most widely used lossless data compressions is Lempel-Zip(LZ) 77 parsing, which achieves a high compression ratio. Bidirectional (a.k.a. macro) parsing is a…
The rise of repetitive datasets has lately generated a lot of interest in compressed self-indexes based on dictionary compression, a rich and heterogeneous family that exploits text repetitions in different ways. For each such compression…
Consider an input text string T[1,N] drawn from an unbounded alphabet. We study partial computation in suffix-based problems for Data Compression and Text Indexing such as (I) retrieve any segment of K<=N consecutive symbols from the…
We study the duplication with transposition distance between strings of length $n$ over a $q$-ary alphabet and their roots. In other words, we investigate the number of duplication operations of the form $x = (abcd) \to y = (abcbd)$, where…
We show a new lower bound for the maximum number of runs in a string. We prove that for any e > 0, (a -- e)n is an asymptotic lower bound, where a = 56733/60064 = 0.944542. It is superior to the previous bound 0.927 given by Franek et al.…
Indexing of very large collections of strings such as those produced by the widespread sequencing technologies, heavily relies on multi-string generalizations of the Burrows-Wheeler Transform (BWT), and for this problem various in-memory…
We consider the evolution of circular string loops in power law expanding universes represented by a spatially flat Friedman-Robertson-Walker metric with scale factor $a(t)\propto t^p$ where $t$ is the cosmic time and $p\geq 0$. Our main…
We prove several combinatorial properties of suffix arrays, including a characterization of suffix arrays through a bijection with a certain well-defined class of permutations. Our approach is based on the characterization of…
Given a word $w$, what is the maximum possible number of appearances of $w$ reading contiguously along any of the directions in $\{-1, 0, 1\}^d \setminus \{\mathbf{0}\}$ in a large $d$-dimensional grid (as in a word search)? Patchell and…