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The dynamics of biological systems, from proteins to cells to organisms, is complex and stochastic. To decipher their physical laws, we need to bridge between experimental observations and theoretical modeling. Thanks to progress in…

软凝聚态物质 · 物理学 2024-06-05 Pierre Ronceray

Simulation-based inference enables learning the parameters of a model even when its likelihood cannot be computed in practice. One class of methods uses data simulated with different parameters to infer models of the likelihood-to-evidence…

机器学习 · 计算机科学 2022-06-08 Giulio Isacchini , Natanael Spisak , Armita Nourmohammad , Thierry Mora , Aleksandra M. Walczak

In this paper we develop a novel approach for estimating large and sparse dynamic factor models using variational inference, also allowing for missing data. Inspired by Bayesian variable selection, we apply slab-and-spike priors onto the…

统计方法学 · 统计学 2022-10-14 Erik Spånberg

Models of networks play a major role in explaining and reproducing empirically observed patterns. Suitable models can be used to randomize an observed network while preserving some of its features, or to generate synthetic graphs whose…

Low-dimensional representations of underdamped systems often provide insightful grasps and analytical tractability. Here, we build such representations via information projections, obtaining an optimal model that captures the most…

统计力学 · 物理学 2022-08-10 Giorgio Nicoletti , Amos Maritan , Daniel M. Busiello

We present a numerical method for learning the dynamics of slow components of unknown multiscale stochastic dynamical systems. While the governing equations of the systems are unknown, bursts of observation data of the slow variables are…

机器学习 · 计算机科学 2024-08-28 Yuan Chen , Dongbin Xiu

We introduce the concept of decision-focused surrogate modeling for solving computationally challenging nonlinear optimization problems in real-time settings. The proposed data-driven framework seeks to learn a simpler, e.g. convex,…

最优化与控制 · 数学 2023-12-27 Rishabh Gupta , Qi Zhang

In this contribution we present an accelerated optimization-based approach for combined state and parameter reduction of a parametrized linear control system which is then used as a surrogate model in a Bayesian inverse setting. Following…

最优化与控制 · 数学 2016-08-22 Christian Himpe , Mario Ohlberger

We consider data-driven reachability analysis of discrete-time stochastic dynamical systems using conformal inference. We assume that we are not provided with a symbolic representation of the stochastic system, but instead have access to a…

系统与控制 · 电气工程与系统科学 2023-09-19 Navid Hashemi , Xin Qin , Lars Lindemann , Jyotirmoy V. Deshmukh

Pattern-forming systems can exhibit a diverse array of complex behaviors as external parameters are varied, enabling a variety of useful functions in biological and engineered systems. First-principles derivations of the underlying…

斑图形成与孤子 · 物理学 2023-11-20 Zachary G. Nicolaou , Guanyu Huo , Yihui Chen , Steven L. Brunton , J. Nathan Kutz

We focus on improving the accuracy of an approximate model of a multiscale dynamical system that uses a set of parameter-dependent terms to account for the effects of unresolved or neglected dynamics on resolved scales. We start by…

计算物理 · 物理学 2019-06-26 Balasubramanya T. Nadiga , Chiyu Jiang , Daniel Livescu

When constructing models of the world, we aim for optimal compressions: models that include as few details as possible while remaining as accurate as possible. But which details -- or features measured in data -- should we choose to include…

定量方法 · 定量生物学 2025-05-06 David P. Carcamo , Nicholas J. Weaver , Purushottam D. Dixit , Christopher W. Lynn

The simulation of complex stochastic network dynamics arising, for instance, from models of coupled biomolecular processes remains computationally challenging. Often, the necessity to scan a models' dynamics over a large parameter space…

定量方法 · 定量生物学 2013-03-14 Tiago Ramalho , Marco Selig , Ulrich Gerland , Torsten A. Enßlin

In this document, some general results in approximation theory and matrix analysis with applications to sparse identification of time series models and nonlinear discrete-time dynamical systems are presented. The aforementioned theoretical…

数值分析 · 数学 2021-08-04 Fredy Vides

We present a probabilistic approach to generate a small, query-able summary of a dataset for interactive data exploration. Departing from traditional summarization techniques, we use the Principle of Maximum Entropy to generate a…

数据库 · 计算机科学 2017-05-25 Laurel Orr , Magda Balazinska , Dan Suciu

Flexible spacecraft structures present significant challenges for physical and control system design due to nonlinear dynamics, mission constraints, environmental variables, and changing operational conditions. This paper presents a…

系统与控制 · 电气工程与系统科学 2026-01-13 Matthew Hilsenrath , Daniel R. Herber

An informative measurement is the most efficient way to gain information about an unknown state. We present a first-principles derivation of a general-purpose dynamic programming algorithm that returns an optimal sequence of informative…

机器学习 · 计算机科学 2023-02-01 Peter N. Loxley , Ka-Wai Cheung

Learning physical dynamics from data is a fundamental challenge in machine learning and scientific modeling. Real-world observational data are inherently incomplete and irregularly sampled, posing significant challenges for existing…

机器学习 · 计算机科学 2026-05-04 Zihan Zhou , Chenguang Wang , Hongyi Ye , Yongtao Guan , Tianshu Yu

We introduce MESSY estimation, a Maximum-Entropy based Stochastic and Symbolic densitY estimation method. The proposed approach recovers probability density functions symbolically from samples using moments of a Gradient flow in which the…

机器学习 · 计算机科学 2024-02-13 Tony Tohme , Mohsen Sadr , Kamal Youcef-Toumi , Nicolas G. Hadjiconstantinou

We present a numerical method to model dynamical systems from data. We use the recently introduced method Scalable Probabilistic Approximation (SPA) to project points from a Euclidean space to convex polytopes and represent these projected…

动力系统 · 数学 2022-02-17 Niklas Wulkow , Péter Koltai , Vikram Sunkara , Christof Schütte