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The cellular energy sensor AMP-activated protein kinase (AMPK) is a metabolic regulator that mediates adaptation to nutritional variations in order to maintain a proper energy balance in cells. We show here that suckling-weaning and…

组织与器官 · 定量生物学 2020-03-31 Camille Huet , Nadia Boudaba , Bruno Guigas , Benoit Viollet , Marc Foretz

AMP activated protein kinase (AMPK) is a critical energy sensor, regulating signaling networks involved in pathology including metabolic diseases and cancer. This increasingly recognized role of AMPK has prompted tremendous research efforts…

The mitogen-activated protein kinase (MAPK) signaling cascade, an evolutionarily conserved motif present in all eukaryotic cells, is involved in coordinating critical cell-fate decisions, regulating protein synthesis, and mediating learning…

亚细胞过程 · 定量生物学 2024-06-11 Tanmay Mitra , Shakti N. Menon , Sitabhra Sinha

Adenosine 5'-triphosphate (ATP) is the nearly ubiquitous "energy currency" of living organisms, and thus is a crucial participant in the majority of enzymatic reactions. The standard models in enzyme kinetics generally ignore the temporal…

分子网络 · 定量生物学 2014-06-10 Jasmine Nirody , Padmini Rangamani

We mathematically modeled the receptor-activated MAP kinase signaling by incorporating the regulation through cellular phosphatases. Activation induced the alignment of a phosphatase cascade in parallel with the MAP kinase pathway. A novel…

分子网络 · 定量生物学 2010-01-20 Virendra K. Chaudhri , Dhiraj Kumar , Manjari Misra , Raina Dua , Kanury V. S. Rao

Mitogen-activated protein kinase (MAPK) signaling pathways play an essential role in the transduction of environmental stimuli to the nucleus, thereby regulating a variety of cellular processes, including cell proliferation, differentiation…

分子网络 · 定量生物学 2014-03-27 Mercedes Pérez Millán , Adrián G. Turjanski

In various biological systems information from many noisy molecular receptors must be integrated into a collective response. A striking example is the thermal imaging organ of pit vipers. Single nerve fibers in the organ reliably respond to…

生物物理 · 物理学 2024-05-31 Isabella R. Graf , Benjamin B. Machta

The neuron consumes energy from ATP hydrolysis to maintain a far-from-equilibrium steady state inside the cell, thus all physiological functions inside the cell are modulated by thermodynamics. The neurons that manage information encoding,…

神经元与认知 · 定量生物学 2024-12-03 Jianwei Li , Simeng Yu , Mingye Guo , Xuewen Shen , Qi Ouyang , Fangting Li

Living organisms continuously harness energy to perform complex functions for their adaptation and survival while part of that energy is dissipated in the form of heat or chemical waste. Determining the energetic cost and the efficiency of…

Mitochondria are critical organelles in eukaryotes that produce the energy currency ATP. In nerve axons, mitochondria are known to align at almost regular intervals to maintain a constant ATP concentration, but little is known about the…

生物物理 · 物理学 2023-05-10 Masashi K. Kajita , Yoshiyuki Konishi , Tetsuhiro S. Hatakeyama

The mitogen activated protein kinase (MAPK) family of proteins is involved in regulating cellular fate activities such as proliferation, differentiation and apoptosis. Their fundamental importance has attracted considerable attention on…

Cells generally convert nutrient resources to useful products via energy transduction. Accordingly, the thermodynamic efficiency of this conversion process is one of the most essential characteristics of living organisms. However, although…

生物物理 · 物理学 2016-05-04 Yusuke Himeoka , Kunihiko Kaneko

Muscles sense internally generated and externally applied forces, responding to these in a coordinated hierarchical manner at different time scales. The center of the basic unit of the muscle, the sarcomeric M-band, is perfectly placed to…

组织与器官 · 定量生物学 2021-09-22 Neil Ibata , Eugene M. Terentjev

Based on a thermodynamic analysis of the kinetic model for the protein phosphorylation-dephosphorylation cycle, we study the ATP (or GTP) energy utilization of this ubiquitous biological signal transduction process. It is shown that the…

生物物理 · 物理学 2007-05-23 Hong Qian

Muscle uses Ca2+ as a messenger to control contraction and relies on ATP to maintain the intracellular Ca2+ homeostasis. Mitochondria are the major sub-cellular organelle of ATP production. With a negative inner membrane potential,…

生物大分子 · 定量生物学 2016-07-29 Jingsong Zhou , Kamal Dhakal , Jianxun Yi

Interconvertible enzyme cascades, exemplified by the mitogen activated protein kinase (MAPK) cascade, are a frequent mechanism in signal transduction pathways. There has been much speculation as to the role of these pathways, and how their…

分子网络 · 定量生物学 2007-10-30 Herbert M Sauro , Brian Ingalls

Mitochondrial adenine nucleotide (AdN) content is regulated through the Ca2+-activated, electroneutral ATP-Mg/Pi carrier (APC). The APC is a protein in the mitochondrial carrier super family that localizes to the inner mitochondrial…

细胞行为 · 定量生物学 2013-04-10 Shivendra G. Tewari , Ranjan K. Dash , Daniel A. Beard , Jason N. Bazil

Incubation with noradrenaline (norepinephrine) of isolated membranes of rat's brain corpus striatum and cortex, showed that ionic-magnesium (Mg2+) is required for the neurotransmitter activatory response of Adenylate Cyclase [ATP…

其他定量生物学 · 定量生物学 2010-12-16 Alfred Bennun

Heat dissipation is ubiquitous in living systems, which constantly convert distinct forms of energy into each other. The transport of thermal energy in liquids and even within proteins is well understood but kinetic energy transfer across a…

软凝聚态物质 · 物理学 2026-01-07 Brandon Neff , Matthias Heyden

Thermogenesis is a physiological activity of releasing heat that originates from intracellular biochemical reactions. Recent experimental studies discovered that externally applied heat changes intracellular signaling locally, resulting in…

生物物理 · 物理学 2023-02-28 Ikuo Kurisaki , Madoka Suzuki
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