相关论文: Optimal Codes Correcting a Single Indel / Edit for…
We first give a construction of binary $t_1$-deletion-$t_2$-insertion-burst correcting codes with redundancy at most $\log(n)+(t_1-t_2-1)\log\log(n)+O(1)$, where $t_1\ge 2t_2$. Then we give an improved construction of binary codes capable…
DNA is an attractive medium for digital data storage. When data is stored on DNA, errors occur, which makes error-correcting coding techniques critical for reliable DNA data storage. To reduce the errors, a common technique is to include…
Error-correcting codes resilient to synchronization errors such as insertions and deletions are known as insdel codes. Due to their important applications in DNA storage and computational biology, insdel codes have recently become a focal…
The problem of designing codes for deletion-correction and synchronization has received renewed interest due to applications in DNA-based data storage systems that use nanopore sequencers as readout platforms. In almost all instances,…
Consider two or more strings $\mathbf{x}^1,\mathbf{x}^2,\ldots,$ that are concatenated to form $\mathbf{x}=\langle \mathbf{x}^1,\mathbf{x}^2,\ldots \rangle$. Suppose that up to $\delta$ deletions occur in each of the concatenated strings.…
We describe properties and constructions of constraint-based codes for DNA-based data storage which account for the maximum repetition length and AT/GC balance. We present algorithms for computing the number of sequences with maximum…
Constructing Reed--Solomon (RS) codes that can correct insertions and deletions (insdel errors) has been considered in numerous recent works. For the special case of two-dimensional RS-codes, it is known [CST23] that an $[n,2]_q$ RS-code…
Though deep learning has been applied successfully in many scenarios, malicious inputs with human-imperceptible perturbations can make it vulnerable in real applications. This paper proposes an error-correcting neural network (ECNN) that…
Due to their sequential nature, traditional DNA synthesis methods are expensive in terms of time and resources. They also fabricate multiple copies of the same strand, introducing redundancy. This redundancy can be leveraged to enhance the…
We study the amount of reliable information that can be stored in a DNA-based storage system with noisy sequencing, where each codeword is composed of short DNA molecules. We analyze a concatenated coding scheme, where the outer code is…
Locally Decodable Codes (LDCs) are error-correcting codes for which individual message symbols can be quickly recovered despite errors in the codeword. LDCs for Hamming errors have been studied extensively in the past few decades, where a…
A $\textit{compression scheme}$ $A$ for a class $\mathbb{G}$ of graphs consists of an encoding algorithm $\textit{Encode}_A$ that computes a binary string $\textit{Code}_A(G)$ for any given graph $G$ in $\mathbb{G}$ and a decoding algorithm…
Insertion and deletion (insdel for short) errors are synchronization errors in communication systems caused by the loss of positional information in the message. Reed-Solomon codes have gained a lot of interest due to its encoding…
The rank-modulation scheme has been recently proposed for efficiently storing data in nonvolatile memories. Error-correcting codes are essential for rank modulation, however, existing results have been limited. In this work we explore a new…
In this work, we investigate the problem of constructing codes capable of correcting two deletions. In particular, we construct a code that requires redundancy approximately 8 log n + O(log log n) bits of redundancy, where n is the length…
DNA is a leading candidate as the next archival storage media due to its density, durability and sustainability. To read (and write) data DNA storage exploits technology that has been developed over decades to sequence naturally occurring…
Tandem duplication in DNA is the process of inserting a copy of a segment of DNA adjacent to the original position. Motivated by applications that store data in living organisms, Jain {\em et al.} (2016) proposed the study of codes that…
In steganography, we always hope to maximize the embedding payload subject to an upper-bounded distortion. We need suitable distortion measurement to evaluate the embedding impact. However, different distortion functions exposes different…
Sorting networks are oblivious sorting algorithms with many practical applications and rich theoretical properties. Propositional encodings of sorting networks are a key tool for proving concrete bounds on the minimum number of comparators…
This paper studies codes that correct bursts of deletions. Namely, a code will be called a $b$-burst-deletion-correcting code if it can correct a deletion of any $b$ consecutive bits. While the lower bound on the redundancy of such codes…