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Due to the fact that the numbers of annually published papers have witnessed a linear growth in some citation networks, a geometric model is thus proposed to predict some statistical features of those networks, in which the academic…

物理与社会 · 物理学 2016-07-07 Qi Liu , Zheng Xie , Engming Dong , Jianping Li

We observe $n$ sequences at each of $m$ sites, and assume that they have evolved from an ancestral sequence that forms the root of a binary tree of known topology and branch lengths, but the sequence states at internal nodes are unknown.…

统计计算 · 统计学 2014-08-28 Adam Persing , Ajay Jasra , Alexandros Beskos , David Balding , Maria De Iorio

In many realistic networks, the edges representing the interactions between the nodes are time-varying. There is growing evidence that the complex network that models the dynamics of the human brain has time-varying interconnections, i.e.,…

神经元与认知 · 定量生物学 2016-11-29 G Manjunath

Ecological systems show a variety of characteristic patterns of biodiversity in space and time. It is a challenge for theory to find models that can reproduce and explain the observed patterns. Since the advent of island biogeography these…

种群与进化 · 定量生物学 2019-10-21 Michaela Hamm , Barbara Drossel

We propose a modeling framework for growing multiplexes where a node can belong to different networks. We define new measures for multiplexes and we identify a number of relevant ingredients for modeling their evolution such as the coupling…

物理与社会 · 物理学 2013-08-01 Vincenzo Nicosia , Ginestra Bianconi , Vito Latora , Marc Barthelemy

The rise in complexity of network data in neuroscience, social networks, and protein-protein interaction networks has been accompanied by several efforts to model and understand these data at different scales. A key multiscale network…

统计方法学 · 统计学 2025-03-04 Al-Fahad Al-Qadhi , Keith Levin , Vincent Lyzinski

The rapid expansion of research across machine learning, vision, and language has produced a volume of publications that is increasingly difficult to synthesize. Traditional bibliometric tools rely mainly on metadata and offer limited…

计算机视觉与模式识别 · 计算机科学 2026-04-16 Zhucun Xue , Jiangning Zhang , Juntao Jiang , Jinzhuo Liu , Haoyang He , Teng Hu , Xiaobin Hu , Yong Liu , Shuicheng Yan

Spatio-temporal data are ubiquitous in the agricultural, ecological, and environmental sciences, and their study is important for understanding and predicting a wide variety of processes. One of the difficulties with modeling spatial…

机器学习 · 统计学 2019-02-25 Christopher K. Wikle

The analysis of complex and time-evolving interactions like social dynamics represents a current challenge for the science of complex systems. Temporal networks stand as a suitable tool to schematise such systems, encoding all the appearing…

A \emph{temporal graph} is, informally speaking, a graph that changes with time. When time is discrete and only the relationships between the participating entities may change and not the entities themselves, a temporal graph may be viewed…

离散数学 · 计算机科学 2015-03-03 Othon Michail

Exploring the structural topology of genome-based large-scale metabolic network is essential for investigating possible relations between structure and functionality. Visualization would be helpful for obtaining immediate information about…

分子网络 · 定量生物学 2007-09-06 Zhao Jing , Tao Lin , Yu Hong , Luo Jian-Hua , Z. W. Cao , Li Yixue

A common theme among the proposed models for network epidemics is the assumption that the propagating object, i.e., a virus or a piece of information, is transferred across the nodes without going through any modification or evolution.…

物理与社会 · 物理学 2019-11-05 Rashad Eletreby , Yong Zhuang , Kathleen M. Carley , Osman Yağan , H. Vincent Poor

Given any complex directed network, a set of acyclic subgraphs - the hierarchical backbone of the network - can be extracted that will provide valuable information about its hierarchical structure. The current paper presents how the…

统计力学 · 物理学 2007-05-23 Luciano da Fontoura Costa

Life on earth is distinguished by long-lived correlations in time. The patterns of material organization that characterize living organisms today are contingent on events that occurred billions of years ago. This contingency is a necessary…

软凝聚态物质 · 物理学 2021-01-06 Peter M. Tzelios , Kyle J. M. Bishop

Successful innovations achieve large geographical coverage by spreading across settlements and distances. For decades, spatial diffusion has been argued to take place along the urban hierarchy such that the innovation first spreads from…

物理与社会 · 物理学 2021-06-23 Eszter Bokányi , Martin Novák , Ákos Jakobi , Balázs Lengyel

Deep neural network algorithms are difficult to analyze because they lack structure allowing to understand the properties of underlying transforms and invariants. Multiscale hierarchical convolutional networks are structured deep…

机器学习 · 计算机科学 2017-03-14 Jörn-Henrik Jacobsen , Edouard Oyallon , Stéphane Mallat , Arnold W. M. Smeulders

We describe the dynamics of a simple adaptive network. The network architecture evolves to a number of disconnected components on which the dynamics is characterized by the possibility of differently synchronized nodes within the same…

适应与自组织系统 · 物理学 2015-05-28 V. Botella-Soler , P. Glendinning

In this study, we performed comprehensive morphological investigations of the spontaneous formations of effective network structures among elements in coupled logistic maps, specifically with a delayed connection change. Our proposed model…

适应与自组织系统 · 物理学 2020-12-02 Amika Ohara , Masashi Fujii , Akinori Awazu

Microbiome studies increasingly indicate that disease-associated shifts cannot be understood from compositional changes alone. The functional architecture of microbial communities encoded in patterns of association among microbial gene…

其他定量生物学 · 定量生物学 2026-04-28 Marianna Milano , Pietro Hiram Guzzi

The co-evolution of structure and dynamics, known as adaptivity, is a fundamental property in various systems and drives diverse emergent behaviors. However, the adaptivity in previous works is primarily stemmed from pairwise situations,…

物理与社会 · 物理学 2025-08-22 Longzhao Liu , Hongwei Zheng , Zhihao Han , Xin Wang , Shaoting Tang