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The extracellular space has an ambiguous role in neuroscience. It is present in every physiologically relevant system and often used as a measurement site in experimental recordings, but it has received subordinate attention compared to the…

神经元与认知 · 定量生物学 2017-05-02 Jurgis Pods

Electrical signaling in the brain plays a vital role to our existence but at the same time, the fundamental mechanism of this propagation is undeciphered. Notable advancements have been made in the numerical modeling supplementing the…

神经元与认知 · 定量生物学 2024-11-11 Rahul Gulati , Shiva Rudraraju

We report here new electrical laws, derived from nonlinear electro-diffusion theory, about the effect of the local geometrical structure, such as curvature, on the electrical properties of a cell. We adopt the Poisson-Nernst-Planck (PNP)…

亚细胞过程 · 定量生物学 2017-11-22 Jerome Cartailler , Zeev Schuss , David Holcman

Action potential propagation along the axons and across the dendrites is the foundation of the electrical activity observed in the brain and the rest of the central nervous system. Theoretical and numerical modeling of this action potential…

定量方法 · 定量生物学 2022-12-01 Rahul Gulati , Shiva Rudraraju

Electrical neural signalling typically takes place at the time-scale of milliseconds, and is typically modeled using the cable equation. This is a good approximation for processes when ionic concentrations vary little during the time course…

细胞行为 · 定量生物学 2014-03-05 Geir Halnes , Ivar Østby , Klas H. Pettersen , Stig W. Omholt , Gaute T. Einevoll

Signals recorded from neurons with extracellular planar sensors have a wide range of waveforms and amplitudes. This variety is a result of different physical conditions affecting the ion currents through a cellular membrane. The…

Characterizing the local voltage distribution within nanophysiological domains, driven by ionic currents through membrane channels, is crucial for studying cellular activity in modern biophysics, yet it presents significant experimental and…

软凝聚态物质 · 物理学 2026-05-14 Frédéric Paquin-Lefebvre , Alejandro Barea Moreno , David Holcman

Cellular electrophysiology is often modeled using the cable equations. The cable model can only be used when ionic concentration effects and three dimensional geometry effects are negligible. The Poisson model, in which the electrostatic…

神经元与认知 · 定量生物学 2009-01-27 Yoichiro Mori

This article provides a theoretical basis for relating macroscopic electrical signals recorded from biological tissue, such as electroencephalogram (EEG) and local field potential (LFP), to the electrophysiological processes at the cellular…

神经元与认知 · 定量生物学 2012-09-24 Hiroyoshi Miyakawa , Toru Aonishi

The Poisson-Nernst-Planck (PNP) system is a standard model for describing ion transport. In many applications, e.g., ions in biological tissues, the presence of thin boundary layers poses both modelling and computational challenges. In a…

生物物理 · 物理学 2018-06-22 Zilong Song , Xiulei Cao , Huaxiong Huang

The Poisson-Nernst-Planck (PNP) system is a standard model for describing ion transport. In many applications, e.g., ions in biological tissues, the presence of thin boundary layers poses both modelling and computational challenges. In this…

生物物理 · 物理学 2018-09-12 Zilong Song , Xiulei Cao , Huaxiong Huang

Mathematical models for excitable cells are commonly based on cable theory, which considers a homogenized domain and spatially constant ionic concentrations. Although such models provide valuable insight, the effect of altered ion…

计算工程、金融与科学 · 计算机科学 2019-11-11 A. J. Ellingsrud , A. Solbrå , G. T. Einevoll , G. Halnes , M. E. Rognes

Extracellular local field potentials (LFP) are usually modeled as arising from a set of current sources embedded in a homogeneous extracellular medium. Although this formalism can successfully model several properties of LFPs, it does not…

生物物理 · 物理学 2016-08-16 Claude Bédard , Helmut Kröger , Alain Destexhe

Measurements of electric potentials from neural activity have played a key role in neuroscience for almost a century, and simulations of neural activity is an important tool for understanding such measurements. Volume conductor (VC) theory…

神经元与认知 · 定量生物学 2021-05-04 Torbjørn V. Ness , Geir Halnes , Solveig Næss , Klas H. Pettersen , Gaute T. Einevoll

The Poisson Nernst-Planck equations for charge concentration and electric potential in a ball is a model of electro-diffusion of ions in the head of a neuronal dendritic spine. We study the relaxation and the steady state when an initial…

经典物理 · 物理学 2015-05-12 Z. Schuss J. Cartailler , D. Holcman

In this article we address the study of ion charge transport in the biological channels separating the intra and extracellular regions of a cell. The focus of the investigation is devoted to including thermal driving forces in the…

数值分析 · 数学 2015-04-24 Riccardo Sacco , Fabio Manganini , Joseph W. Jerome

This is an early but comprehensive review of the PNP Poisson Nernst Planck theory of ion channels. Extensive reference is made to the earlier literature. The starting place for this theory of open channels is a theory of electrodiffusion…

生物大分子 · 定量生物学 2010-09-16 Bob Eisenberg

The Poisson-Nernst-Planck (PNP) equations are fundamental for modeling ion transport in electrochemical systems, capturing the intricate interplay of concentration gradients, electric fields, and ion fluxes essential for applications such…

化学物理 · 物理学 2025-01-13 Yitao He , Dan Zhao

We present a microscopic approach for the coupling of cortical activity, as resulting from proper dipole currents of pyramidal neurons, to the electromagnetic field in extracellular fluid in presence of diffusion and Ohmic conduction.…

神经元与认知 · 定量生物学 2013-10-08 Peter beim Graben , Serafim Rodrigues

We study the electro-diffusion properties of a domain containing a cusp-shaped structure in three dimensions when one ionic specie is dominant. The mathematical problem consists in solving the steady-state Poisson-Nernst-Planck (PNP)…

神经元与认知 · 定量生物学 2017-10-09 J. Cartailler , D. Holcman
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