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We convert the Chinese medical text attributes extraction task into a sequence tagging or machine reading comprehension task. Based on BERT pre-trained models, we have not only tried the widely used LSTM-CRF sequence tagging model, but also…

计算与语言 · 计算机科学 2020-08-25 Gang Zhao , Teng Zhang , Chenxiao Wang , Ping Lv , Ji Wu

In this paper, we report our method for the Information Extraction task in 2019 Language and Intelligence Challenge. We incorporate BERT into the multi-head selection framework for joint entity-relation extraction. This model extends…

计算与语言 · 计算机科学 2019-09-27 Weipeng Huang , Xingyi Cheng , Taifeng Wang , Wei Chu

For several purposes in Natural Language Processing (NLP), such as Information Extraction, Sentiment Analysis or Chatbot, Named Entity Recognition (NER) holds an important role as it helps to determine and categorize entities in text into…

计算与语言 · 计算机科学 2020-03-24 Thong Nguyen , Duy Nguyen , Pramod Rao

The field of clinical natural language processing has been advanced significantly since the introduction of deep learning models. The self-supervised representation learning and the transfer learning paradigm became the methods of choice in…

计算与语言 · 计算机科学 2020-04-27 Andrey Kormilitzin , Nemanja Vaci , Qiang Liu , Alejo Nevado-Holgado

The rapid evolution of AI technologies, exemplified by BERT-family models, has transformed scientific research, yet little is known about their production and recognition dynamics in the scientific system. This study investigates the…

数字图书馆 · 计算机科学 2026-02-02 Likun Cao , Kai Li

Contextual Relation Extraction (CRE) is mainly used for constructing a knowledge graph with a help of ontology. It performs various tasks such as semantic search, query answering, and textual entailment. Relation extraction identifies the…

计算与语言 · 计算机科学 2023-09-14 R. Priyadharshini , G. Jeyakodi , P. Shanthi Bala

Background: Identifying relationships between clinical events and temporal expressions is a key challenge in meaningfully analyzing clinical text for use in advanced AI applications. While previous studies exist, the state-of-the-art…

计算与语言 · 计算机科学 2020-04-15 Hong Guan , Jianfu Li , Hua Xu , Murthy Devarakonda

Sequence labeling is a widely used method for named entity recognition and information extraction from unstructured natural language data. In clinical domain one major application of sequence labeling involves extraction of medical entities…

计算与语言 · 计算机科学 2016-08-03 Abhyuday Jagannatha , Hong Yu

Relation extraction between drugs plays a crucial role in identifying drug drug interactions and predicting side effects. The advancement of machine learning methods in relation extraction, along with the development of large medical text…

计算与语言 · 计算机科学 2025-10-28 Ali Fata , Hossein Rahmani , Parinaz Soltanzadeh , Amirhossein Derakhshan , Behrouz Minaei Bidgoli

The Bidirectional Encoder Representations from Transformers (BERT) model has achieved the state-of-the-art performance for many natural language processing (NLP) tasks. Yet, limited research has been contributed to studying its…

计算与语言 · 计算机科学 2021-09-23 Zimin Wan , Chenchen Xu , Hanna Suominen

Machine learning is becoming a preferred method for the virtual screening of organic materials due to its cost-effectiveness over traditional computationally demanding techniques. However, the scarcity of labeled data for organic materials…

化学物理 · 物理学 2024-03-06 Chengwei Zhang , Yushuang Zhai , Ziyang Gong , Hongliang Duan , Yuan-Bin She , Yun-Fang Yang , An Su

Recent transformer-based approaches demonstrate promising results on relational scientific information extraction. Existing datasets focus on high-level description of how research is carried out. Instead we focus on the subtleties of how…

计算与语言 · 计算机科学 2021-09-23 Ian H. Magnusson , Scott E. Friedman

Contrastive learning has been used to learn a high-quality representation of the image in computer vision. However, contrastive learning is not widely utilized in natural language processing due to the lack of a general method of data…

计算与语言 · 计算机科学 2021-04-29 Peng Su , Yifan Peng , K. Vijay-Shanker

We introduce SpERT, an attention model for span-based joint entity and relation extraction. Our key contribution is a light-weight reasoning on BERT embeddings, which features entity recognition and filtering, as well as relation…

计算与语言 · 计算机科学 2021-06-30 Markus Eberts , Adrian Ulges

Automated knowledge discovery from trending chemical literature is essential for more efficient biomedical research. How to extract detailed knowledge about chemical reactions from the core chemistry literature is a new emerging challenge…

计算与语言 · 计算机科学 2021-08-31 Chenkai Sun , Weijiang Li , Jinfeng Xiao , Nikolaus Nova Parulian , ChengXiang Zhai , Heng Ji

With the development and business adoption of knowledge graph, there is an increasing demand for extracting entities and relations of knowledge graphs from unstructured domain documents. This makes the automatic knowledge extraction for…

计算与语言 · 计算机科学 2021-03-02 Wang Zijia , Li Ye , Zhu Zhongkai

Electronic Theses and Dissertations (ETDs) contain domain knowledge that can be used for many digital library tasks, such as analyzing citation networks and predicting research trends. Automatic metadata extraction is important to build…

数字图书馆 · 计算机科学 2021-07-02 Muntabir Hasan Choudhury , Himarsha R. Jayanetti , Jian Wu , William A. Ingram , Edward A. Fox

Analysis of large continuous-time stochastic systems is a computationally intensive task. In this work we focus on population models arising from chemical reaction networks (CRNs), which play a fundamental role in analysis and design of…

系统与控制 · 计算机科学 2019-05-27 Milan Češka , Jan Křetínský

Automated relation extraction (RE) from biomedical literature is critical for many downstream text mining applications in both research and real-world settings. However, most existing benchmarking datasets for bio-medical RE only focus on…

计算与语言 · 计算机科学 2022-07-20 Ling Luo , Po-Ting Lai , Chih-Hsuan Wei , Cecilia N Arighi , Zhiyong Lu

Continual relation extraction is an important task that focuses on extracting new facts incrementally from unstructured text. Given the sequential arrival order of the relations, this task is prone to two serious challenges, namely…

计算与语言 · 计算机科学 2021-01-11 Tongtong Wu , Xuekai Li , Yuan-Fang Li , Reza Haffari , Guilin Qi , Yujin Zhu , Guoqiang Xu