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Molecular circuits capable of autonomous learning could unlock novel applications in fields such as bioengineering and synthetic biology. To this end, existing chemical implementations of neural computing have mainly relied on emulating…

机器学习 · 计算机科学 2025-09-23 Rajiv Teja Nagipogu , John H. Reif

Named entity recognition (NER) is frequently addressed as a sequence classification task where each input consists of one sentence of text. It is nevertheless clear that useful information for the task can often be found outside of the…

计算与语言 · 计算机科学 2020-12-18 Jouni Luoma , Sampo Pyysalo

We introduce a new scientific named entity recognizer called SEPT, which stands for Span Extractor with Pre-trained Transformers. In recent papers, span extractors have been demonstrated to be a powerful model compared with sequence…

计算与语言 · 计算机科学 2020-10-14 Tan Yan , Heyan Huang , Xian-Ling Mao

Fine-tuning language models, such as BERT, on domain specific corpora has proven to be valuable in domains like scientific papers and biomedical text. In this paper, we show that fine-tuning BERT on legal documents similarly provides…

计算与语言 · 计算机科学 2019-11-04 Emad Elwany , Dave Moore , Gaurav Oberoi

Chinese named entity recognition (CNER) is an important task in Chinese natural language processing field. However, CNER is very challenging since Chinese entity names are highly context-dependent. In addition, Chinese texts lack delimiters…

计算与语言 · 计算机科学 2019-05-07 Fangzhao Wu , Junxin Liu , Chuhan Wu , Yongfeng Huang , Xing Xie

Optical Character Recognition (OCR) is an established task with the objective of identifying the text present in an image. While many off-the-shelf OCR models exist, they are often trained for either scientific (e.g., formulae) or generic…

计算与语言 · 计算机科学 2024-03-26 Nan Zhang , Connor Heaton , Sean Timothy Okonsky , Prasenjit Mitra , Hilal Ezgi Toraman

Document-level relation extraction (RE) aims to extract the relations between entities from the input document that usually containing many difficultly-predicted entity pairs whose relations can only be predicted through relational…

计算与语言 · 计算机科学 2022-11-29 Liang Zhang , Jinsong Su , Yidong Chen , Zhongjian Miao , Zijun Min , Qingguo Hu , Xiaodong Shi

We describe the design and use of the CREER dataset, a large corpus annotated with rich English grammar and semantic attributes. The CREER dataset uses the Stanford CoreNLP Annotator to capture rich language structures from Wikipedia plain…

计算与语言 · 计算机科学 2022-06-10 Yu-Siou Tang , Chung-Hsien Wu

In this paper, we present an end-to-end joint entity and relation extraction approach based on transformer-based language models. We apply the model to the task of linking mathematical symbols to their descriptions in LaTeX documents. In…

计算与语言 · 计算机科学 2022-05-05 Nicholas Popovic , Walter Laurito , Michael Färber

NER has been traditionally formulated as a sequence labeling task. However, there has been recent trend in posing NER as a machine reading comprehension task (Wang et al., 2020; Mengge et al., 2020), where entity name (or other information)…

机器学习 · 计算机科学 2022-05-13 Anubhav Shrimal , Avi Jain , Kartik Mehta , Promod Yenigalla

The high volume of published chemical patents and the importance of a timely acquisition of their information gives rise to automating information extraction from chemical patents. Anaphora resolution is an important component of…

计算与语言 · 计算机科学 2023-06-26 Chieling Yueh , Evangelos Kanoulas , Bruno Martins , Camilo Thorne , Saber Akhondi

We present a system that allows life-science researchers to search a linguistically annotated corpus of scientific texts using patterns over dependency graphs, as well as using patterns over token sequences and a powerful variant of boolean…

计算与语言 · 计算机科学 2020-06-09 Hillel Taub-Tabib , Micah Shlain , Shoval Sadde , Dan Lahav , Matan Eyal , Yaara Cohen , Yoav Goldberg

We apply a Transformer architecture, specifically BERT, to learn flexible and high quality molecular representations for drug discovery problems. We study the impact of using different combinations of self-supervised tasks for pre-training,…

机器学习 · 计算机科学 2020-11-30 Benedek Fabian , Thomas Edlich , Héléna Gaspar , Marwin Segler , Joshua Meyers , Marco Fiscato , Mohamed Ahmed

Document-level relation extraction aims to extract relations among multiple entity pairs from a document. Previously proposed graph-based or transformer-based models utilize the entities independently, regardless of global information among…

计算与语言 · 计算机科学 2023-01-27 Ningyu Zhang , Xiang Chen , Xin Xie , Shumin Deng , Chuanqi Tan , Mosha Chen , Fei Huang , Luo Si , Huajun Chen

Multi-task learning (MTL) has achieved remarkable success in natural language processing applications. In this work, we study a multi-task learning model with multiple decoders on varieties of biomedical and clinical natural language…

计算与语言 · 计算机科学 2020-05-07 Yifan Peng , Qingyu Chen , Zhiyong Lu

Language modeling has seen impressive progress over the last years, mainly prompted by the invention of the Transformer architecture, sparking a revolution in many fields of machine learning, with breakthroughs in chemistry and biology. In…

机器学习 · 计算机科学 2023-10-11 Andres M Bran , Philippe Schwaller

Information extraction is an important task in NLP, enabling the automatic extraction of data for relational database filling. Historically, research and data was produced for English text, followed in subsequent years by datasets in…

计算与语言 · 计算机科学 2019-12-13 Taesun Moon , Parul Awasthy , Jian Ni , Radu Florian

Relation extraction (RE) has recently moved from the sentence-level to document-level, which requires aggregating document information and using entities and mentions for reasoning. Existing works put entity nodes and mention nodes with…

计算与语言 · 计算机科学 2023-03-08 Hongfei Liu , Zhao Kang , Lizong Zhang , Ling Tian , Fujun Hua

Chemical patent documents describe a broad range of applications holding key reaction and compound information, such as chemical structure, reaction formulas, and molecular properties. These informational entities should be first identified…

计算与语言 · 计算机科学 2020-09-18 Jenny Copara , Nona Naderi , Julien Knafou , Patrick Ruch , Douglas Teodoro

Acknowledgments in scientific papers may give an insight into aspects of the scientific community, such as reward systems, collaboration patterns, and hidden research trends. The aim of the paper is to evaluate the performance of different…

计算与语言 · 计算机科学 2022-06-23 Nina Smirnova , Philipp Mayr
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