相关论文: Intrinsic fluctuations of chemical reactions with …
In many applied settings, the chemical Langevin equation and linear noise approximation are used in the simulation and data analysis of stochastic reaction networks. With the goal of exploring the sensitivities of reaction network paths to…
In non-linear dynamics there are several model systems to study oscillations. One iconic example is the "Brusselator", which describes the dynamics of the concentration of two chemical species in the non-equilibrium phase. In this work we…
A stochastic version of the Brusselator model is proposed and studied via the system size expansion. The mean-field equations are derived and shown to yield to organized Turing patterns within a specific parameters region. When determining…
We present a heuristic derivation of Gaussian approximations for stochastic chemical reaction systems with distributed delay. In particular we derive the corresponding chemical Langevin equation. Due to the non-Markovian character of the…
In a system of non-linear chemical reactions called the Brusselator, we show that {\it intrinsic noise} can be regulated to drive it to exhibit resonance in the presence of a sub-threshold signal. The phenomena of periodic stochastic…
We formulate and study computationally the fluctuating compressible Navier-Stokes equations for reactive multi-species fluid mixtures. We contrast two different expressions for the covariance of the stochastic chemical production rate in…
Stochastic fluctuations of molecule numbers are ubiquitous in biological systems. Important examples include gene expression and enzymatic processes in living cells. Such systems are typically modelled as chemical reaction networks whose…
We consider a stochastic version of the so-called Brusselator - a mathematical model for a two-dimensional chemical reaction network - in which one of its parameters is assumed to vary randomly. It has been suggested via numerical…
Theoretical and experimental studies have shown that the fluctuations of in vivo systems break the fluctuation-dissipation theorem. One can thus ask what information is contained in the correlation functions of protein concentrations and…
This paper is the second in a series devoted to the study of Langevin systems subjected to a continuous time-delayed feedback control. The goal of our previous paper [Phys. Rev. E 91, 042114 (2015)] was to derive second-law-like…
We prove that the famous diffusive Brusselator model can support more complicated spatial-temporal wave structure than the usual temporal-oscillation from a standard Hopf bifurcation. In our investigation, we discover that the diffusion…
The Brusselator is a generic reaction-diffusion model for a tri-molecular chemical reaction. We consider the case when the input and output reactions are slow. In this limit, we show the existence of $K$-periodic, spatially bi-stable…
Intrinsic fluctuations around the solution of the lattice Boltzmann equation are described or modeled by addition of a white Gaussian noise source. For stationary states a fluctuation-dissipation theorem relates the variance of the…
Biomolecular processes are typically modeled using chemical reaction networks coupled to infinitely large chemical reservoirs. A difference in chemical potential between these reservoirs can drive the system into a non-equilibrium steady…
We analyse the effect of intrinsic fluctuations on the properties of bistable stochastic systems with time scale separation operating under1 quasi-steady state conditions. We first formulate a stochastic generalisation of the quasi-steady…
The measured time series from complex systems are renowned for their intricate stochastic behavior, characterized by random fluctuations stemming from external influences and nonlinear interactions. These fluctuations take diverse forms,…
We investigate a nonideal, thermodynamically consistent Brusselator reaction-diffusion (RD) system that explicitly incorporates molecular interactions among species in both the diffusion process and the underlying chemical reaction network.…
To study the role of fluctuation in the collisional dynamics, Boltzmann- Langevin formalism is applied in a two dimensional scenario. The importance of collective flow towards the formation of hollow structure is exhibited in our simulation…
Chemical reaction networks can undergo nonequilibrium phase transitions upon variation of external control parameters like the chemical potential of a species. We investigate the flux in the associated chemostats that is proportional to the…
We build on a previous statistical model for distributed systems and formulate it in a way that the deterministic and stochastic processes within the system are clearly separable. We show how internal fluctuations can be analysed in a…