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The challenging problem of conducting fully Bayesian inference for the reaction rate constants governing stochastic kinetic models (SKMs) is considered. Given the challenges underlying this problem, the Markov jump process representation is…

统计计算 · 统计学 2019-01-10 Andrew Golightly , Emma Bradley , Tom Lowe , Colin S. Gillespie

The maximum entropy principle (MEP) apparently allows us to derive, or justify, fundamental results of equilibrium statistical mechanics. Because of this, a school of thought considers the MEP as a powerful and elegant way to make…

统计力学 · 物理学 2015-12-09 Gennaro Auletta , Lamberto Rondoni , Angelo Vulpiani

We develop a novel class of MCMC algorithms based on a stochastized Nesterov scheme. With an appropriate addition of noise, the result is a time-inhomogeneous underdamped Langevin equation, which we prove emits a specified target…

计算工程、金融与科学 · 计算机科学 2023-11-29 Duy H. Thai , Alexander L. Young , David B. Dunson

We present a method for pursuit/evasion that is highly efficient and and scales to large teams of aircraft. The underlying algorithm is an efficient algorithm for solving Markov Decision Processes (MDPs) that supports fully continuous state…

人工智能 · 计算机科学 2019-09-11 Joshua R. Bertram , Peng Wei

The Markov entropy decomposition (MED) is a recently-proposed, cluster-based simulation method for finite temperature quantum systems with arbitrary geometry. In this paper, we detail numerical algorithms for performing the required steps…

统计力学 · 物理学 2013-05-29 Andrew J. Ferris , David Poulin

We introduce a set of techniques that allow for efficiently generating many independent random walks in the Massive Parallel Computation (MPC) model with space per machine strongly sublinear in the number of vertices. In this…

数据结构与算法 · 计算机科学 2019-11-07 Jakub Łącki , Slobodan Mitrović , Krzysztof Onak , Piotr Sankowski

The minimum-gain eigenvalue assignment/pole placement problem (MGEAP) is a classical problem in LTI systems with static state feedback. In this paper, we study the MGEAP when the state feedback has arbitrary sparsity constraints. We…

最优化与控制 · 数学 2020-08-17 Vaibhav Katewa , Fabio Pasqualetti

In the last few decades, several novel algorithms have been designed for finding critical points on PES and the minimum energy paths connecting them. This has led to considerably improve our understanding of reaction mechanisms and kinetics…

计算工程、金融与科学 · 计算机科学 2024-10-30 Sandra Liz Simon , Nitin Kaistha , Vishal Agarwal

Lagrangian particle methods based on detailed atomic and molecular models are powerful computational tools for studying the dynamics of microscale and nanoscale systems. However, the maximum time step is limited by the smallest oscillation…

计算物理 · 物理学 2019-06-26 Ansel L. Blumers , Zhen Li , George Em Karniadakis

Searching for collisions in random functions is a fundamental computational problem, with many applications in symmetric and asymmetric cryptanalysis. When one searches for a single collision, the known quantum algorithms match the query…

量子物理 · 物理学 2025-09-18 Xavier Bonnetain , Johanna Loyer , André Schrottenloher , Yixin Shen

This paper studies a classic maximum entropy sampling problem (MESP), which aims to select the most informative principal submatrix of a prespecified size from a covariance matrix. MESP has been widely applied to many areas, including…

机器学习 · 统计学 2023-05-02 Yongchun Li , Weijun Xie

Novel Markov Chain Monte Carlo (MCMC) methods have enabled the generation of large ensembles of redistricting plans through graph partitioning. However, existing algorithms such as Reversible Recombination (RevReCom) and Metropolized Forest…

数据结构与算法 · 计算机科学 2025-10-28 Atticus McWhorter , Daryl DeFord

This paper addresses the sparse representation (SR) problem within a general Bayesian framework. We show that the Lagrangian formulation of the standard SR problem, i.e., $\mathbf{x}^\star=\arg\min_\mathbf{x} \lbrace \|…

信息论 · 计算机科学 2014-01-30 Cédric Herzet , Angélique Drémeau

The escape rate of a Brownian particle over a potential barrier is accurately described by the Kramers theory. A quantitative theory explicitly taking the activity of Brownian particles into account has been lacking due to the inherently…

软凝聚态物质 · 物理学 2017-02-01 A. Sharma , R. Wittmann , J. M. Brader

We present a nearly-linear time algorithm for finding a minimum-cost flow in planar graphs with polynomially bounded integer costs and capacities. The previous fastest algorithm for this problem is based on interior point methods (IPMs) and…

数据结构与算法 · 计算机科学 2022-05-04 Sally Dong , Yu Gao , Gramoz Goranci , Yin Tat Lee , Richard Peng , Sushant Sachdeva , Guanghao Ye

The computational efficiency of stochastic simulation algorithms is notoriously limited by the kinetic trapping of the simulated trajectories within low energy basins. Here we present a new method that overcomes kinetic trapping while still…

统计力学 · 物理学 2014-12-08 Manuel Athènes , Vasily V. Bulatov

With the increasing adoption of plug-in electric vehicles (PEVs), it is critical to develop efficient charging coordination mechanisms that minimize the cost and impact of PEV integration to the power grid. In this paper, we consider the…

最优化与控制 · 数学 2016-04-04 Wanrong Tang , Ying Jun Zhang

We introduce a general procedure for directly ascertaining how many independent stochastic sources exist in a complex system modeled through a set of coupled Langevin equations of arbitrary dimension. The procedure is based on the…

数据分析、统计与概率 · 物理学 2013-06-03 V. V. Vasconcelos , F. Raischel , M. Haase , J. Peinke , M. Wächter , P. G. Lind , D. Kleinhans

Emergency navigation algorithms direct evacuees to exits when disastrous events such as fire take place. Due to the spread of hazards, latency in information updating and unstable flows of civilians, emergency evacuation is absolutely a…

其他计算机科学 · 计算机科学 2013-10-11 Huibo Bi

A main distinguishing feature of non-Hermitian quantum mechanics is the presence of exceptional points (EPs). They correspond to the coalescence of two energy levels and their respective eigenvectors. Here, we use the Lipkin-Meshkov-Glick…

统计力学 · 物理学 2017-10-12 Milan Šindelka , Lea F. Santos , Nimrod Moiseyev