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We present a mathematical model of lophotrichous bacteria, motivated by Pseudomonas putida, which swim through fluid by rotating a cluster of multiple flagella extended from near one pole of the cell body. Although the flagella rotate…

定量方法 · 定量生物学 2024-08-26 Jeungeun Park , Yongsam Kim , Wanho Lee , Veronika Pfeifer , Valeriia Muraveva , Carsten Beta , Sookkyung Lim

We describe a simple automated method to extract and quantify transient heterogeneous dynamical changes from large datasets generated in single molecule/particle tracking experiments. Based on wavelet transform, the method transforms raw…

数据分析、统计与概率 · 物理学 2013-06-04 Kejia Chen , Bo Wang , Juan Guan , Steve Granick

The bundling of flagella is known to create a "run" phase, where the bacteria moves in a nearly straight line rather than making changes in direction. Historically, mechanical explanations for the bundling phenomenon intrigued many…

机器人学 · 计算机科学 2023-10-17 Sangmin Lim , Achyuta Yadunandan , Mohammad Khalid Jawed

Swimming eukaryotic microorganisms such as spermatozoa, algae and ciliates self-propel in viscous fluids using travelling wave-like deformations of slender appendages called flagella. Waves are predominant because Purcell's scallop theorem…

流体动力学 · 物理学 2020-11-18 Eric Lauga

Many eukaryotic microorganisms propelled by multiple flagella can swim very rapidly with distinct gaits. Here, we model a three-dimensional mutiflagellate swimming strategy, resembling the microalgae, and investigate the effects of…

软凝聚态物质 · 物理学 2023-10-17 Shiyuan Hu , Fanlong Meng

The task of assessing movement quality has recently gained high demand in a variety of domains. The ability to automatically assess subject movement in videos that were captured by affordable devices, such as Kinect cameras, is essential…

计算机视觉与模式识别 · 计算机科学 2020-07-16 Tal Hakim , Ilan Shimshoni

Active swimmers are ubiquitous in nature, found in many diverse biological systems ranging from bacteria to vertebrate fish. Of particular importance are sperm cells which are swimmers that are crucial for the survival of many species…

生物物理 · 物理学 2017-11-15 James L. Kingsley , Utkan Demirci , Erkan Tuzel

The bacterial flagellar motor is a highly efficient rotary machine used by many bacteria to propel themselves. It has recently been shown that at low speeds its rotation proceeds in steps [Sowa et al. (2005) Nature 437, 916--919]. Here we…

生物物理 · 物理学 2009-10-25 Thierry Mora , Howard Yu , Yoshiyuki Sowa , Ned S. Wingreen

Most motile bacteria swim in viscous fluids by rotating multiple helical flagellar filaments. These semi-rigid filaments repeatedly join ('bundle') and separate ('unbundle'), resulting in a two-gait random walk-like motion of the cell. In…

流体动力学 · 物理学 2020-11-18 Alexander Chamolly , Eric Lauga

Bacteriophage viruses, one of the most abundant entities in our planet, lack the ability to move independently. Instead, they crowd fluid environments in anticipation of a random encounter with a bacterium. Once they land on the cell body…

生物物理 · 物理学 2018-11-05 Panayiota Katsamba , Eric Lauga

Flagellated microorganisms can swim at low Reynolds numbers and adapt to changes in their environment. Specifically, the flagella can switch their shapes or modes through gene expression. In the past decade, efforts have been made to…

机器人学 · 计算机科学 2024-01-02 Liyuan Tan , Yang Yang , Li Fang , David J. Cappelleri

The beating flagella of the green alga Chlamydomonas reinhardtii play a prominent role in cellular mechanics, enabling cells to both displace and sense surrounding fluid. Specifically, flagellum-induced fluid transport enables microalgae to…

流体动力学 · 物理学 2026-03-10 Md Iftekhar Yousuf Emon , Gregorius R. Pradipta , Xiang Cheng , Xin Yong

Flagella are hair-like appendages attached to microorganisms that allow the organisms to traverse their fluid environment. The algae Volvox are spherical swimmers with thousands of individual flagella on their surface and their coordination…

流体动力学 · 物理学 2020-10-07 Forest Mannan , Miika Jarvela , Karin Leriderman

This paper focuses on studying a model for molecular motors responsible for the bending of the axoneme in the flagella of microorganisms. The model is a coupled system of partial differential equations inspired by J\"ulicher et al. or…

Biomedical applications such as targeted drug delivery, microsurgery, and sensing rely on reaching precise areas within the body in a minimally invasive way. Artificial bacterial flagella (ABFs) have emerged as potential tools for this task…

生物物理 · 物理学 2025-05-15 Lucas Amoudruz , Sergey Litvinov , Petros Koumoutsakos

Advances in optical neuroimaging techniques now allow neural activity to be recorded with cellular resolution in awake and behaving animals. Brain motion in these recordings pose a unique challenge. The location of individual neurons must…

神经元与认知 · 定量生物学 2017-05-22 Jeffrey P. Nguyen , Ashley N. Linder , George S. Plummer , Joshua W. Shaevitz , Andrew M. Leifer

Microalgae counting is used to measure biomass quantity. Usually, it is performed in a manual way using a Neubauer chamber and expert criterion, with the risk of a high error rate. This paper addresses the methodology for automatic…

A flagellated bacterium navigates fluid environments by rotating its helical flagellar bundle. The wobbling of the bacterial body significantly influences its swimming behavior. To quantify the three underlying motions--precession,…

软凝聚态物质 · 物理学 2026-05-29 Jinglei Hu , Chen Gui , Mingxin Mao , Pu Feng , Yurui Liu , Xiangjun Gong , Gerhard Gompper

We systematically investigate how flagellar morphology governs the stability of bacterial Brownian motion, evaluating the effectiveness of a simplified chiral two-body model. This model, which effectively captures the specific bacterial…

流体动力学 · 物理学 2026-03-03 Baopi Liu , Bowen Jin , Lu Chen , Ning Liu

Eukaryotic swimming cells such as spermatozoa, algae or protozoa use flagella or cilia to move in viscous fluids. The motion of their flexible appendages in the surrounding fluid induces propulsive forces that balance with the viscous drag…

软凝聚态物质 · 物理学 2023-10-06 Maciej Lisicki , Marcos F. Velho Rodrigues , Eric Lauga