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We present a novel approach for the prediction of anticancer compound sensitivity by means of multi-modal attention-based neural networks (PaccMann). In our approach, we integrate three key pillars of drug sensitivity, namely, the molecular…

Ensemble methods in machine learning aim to improve prediction accuracy by combining multiple models. This is achieved by ensuring diversity among predictors to capture different data aspects. Homogeneous ensembles use identical models,…

量子物理 · 物理学 2025-11-04 Emiliano Tolotti , Enrico Blanzieri , Davide Pastorello

Ensemble learning combines several individual models to obtain a better generalization performance. In this work we present a practical method for estimating the joint power of several classifiers. It differs from existing approaches which…

人工智能 · 计算机科学 2023-12-22 Simi Haber , Yonatan Wexler

Image classification is widely used to build predictive models for breast cancer diagnosis. Most existing approaches overwhelmingly rely on deep convolutional networks to build such diagnosis pipelines. These model architectures, although…

图像与视频处理 · 电气工程与系统科学 2022-01-20 Alireza Rezazadeh , Yasamin Jafarian , Ali Kord

According to the American Diabetes Association(ADA), 30.3 million people in the United States have diabetes, but only 7.2 million may be undiagnosed and unaware of their condition. Type 2 diabetes is usually diagnosed for most patients…

机器学习 · 计算机科学 2019-10-22 Ramya Akula , Ni Nguyen , Ivan Garibay

Introduction. We investigate the generalization ability of models built on datasets containing a small number of subjects, recorded in single study protocols. Next, we propose and evaluate methods combining these datasets into a single,…

机器学习 · 计算机科学 2023-12-05 Gideon Vos , Kelly Trinh , Zoltan Sarnyai , Mostafa Rahimi Azghadi

Protein-ligand binding affinity prediction is essential for drug discovery and toxicity assessment. While machine learning (ML) promises fast and accurate predictions, its progress is constrained by the availability of reliable data. In…

The rising interest in pattern recognition and data analytics has spurred the development of innovative machine learning algorithms and tools. However, as each algorithm has its strengths and limitations, one is motivated to judiciously…

机器学习 · 统计学 2018-07-31 Panagiotis A. Traganitis , Alba Pagès-Zamora , Georgios B. Giannakis

In this paper, we focus on addressing the challenges of detecting malicious attacks in networks by designing an advanced Explainable Intrusion Detection System (xIDS). The existing machine learning and deep learning approaches have…

密码学与安全 · 计算机科学 2025-03-04 Muhammad Adil , Mian Ahmad Jan , Safayat Bin Hakim , Houbing Herbert Song , Zhanpeng Jin

Data-driven methods based on machine learning have the potential to accelerate computational analysis of atomic structures. In this context, reliable uncertainty estimates are important for assessing confidence in predictions and enabling…

机器学习 · 计算机科学 2021-11-04 Jonas Busk , Peter Bjørn Jørgensen , Arghya Bhowmik , Mikkel N. Schmidt , Ole Winther , Tejs Vegge

Toxicity evaluation of chemical compounds has traditionally relied on animal experiments;however, the demand for non-animal-based prediction methods for toxicology of compounds is increasing worldwide. Our aim was to provide a…

应用统计 · 统计学 2023-02-06 Jun-ichi Takeshita , Akinobu Toyoda , Hidenori Tani , Yasunori Endo , Sadaaki Miyamoto

Proteins and other macromolecules exist not in a single state but as dynamic ensembles of interconverting conformations, which are essential for catalysis, allosteric regulation, and molecular recognition. While AI-based structure…

生物大分子 · 定量生物学 2025-10-22 Stephanie A. Wankowicz , Massimiliano Bonomi

One of the main challenges in drug discovery is to find molecules that bind specifically and strongly to their target protein while having minimal binding to other proteins. By predicting binding affinity, it is possible to identify the…

量子物理 · 物理学 2023-01-19 L. Domingo , M. Djukic , C. Johnson , F. Borondo

The absorption, distribution, metabolism, excretion, and toxicity (ADMET) properties are important in drug discovery as they define efficacy and safety. In this work, we applied an ensemble of features, including fingerprints and…

生物大分子 · 定量生物学 2022-09-20 Hao Tian , Rajas Ketkar , Peng Tao

Toxic interactions during code reviews can undermine teamwork and hinder productivity in software engineering (SE) teams. While prior studies explore toxicity detection and empirical investigation, they lack real-time detoxification tools…

软件工程 · 计算机科学 2026-04-17 MD Awsaf Alam Anindya , Showvik Biswas , Anindya Iqbal , Jaydeb Sarker , Amiangshu Bosu

Herbal compounds present complex toxicity profiles that are often influenced by both intrinsic chemical properties and pharmacokinetics (PK) governing absorption and clearance. In this study, we develop a quantum regression model to predict…

定量方法 · 定量生物学 2025-06-26 Don Roosan , Saif Nirzhor , Rubayat Khan

Dynamic predictions for longitudinal and time-to-event outcomes have become a versatile tool in precision medicine. Our work is motivated by the application of dynamic predictions in the decision-making process for primary biliary…

Predictive models based on machine learning can be highly sensitive to data error. Training data are often combined with a variety of different sources, each susceptible to different types of inconsistencies, and new data streams during…

数据库 · 计算机科学 2017-11-07 Sanjay Krishnan , Michael J. Franklin , Ken Goldberg , Eugene Wu

Herein, we present the application of MEGAN, our explainable AI (xAI) model, for the identification of small colloidally aggregating molecules (SCAMs). This work offers solutions to the long-standing problem of false positives caused by…

生物大分子 · 定量生物学 2025-05-28 Hunter Sturm , Jonas Teufel , Kaitlin A. Isfeld , Pascal Friederich , Rebecca L. Davis

In recent times, the manufacturing processes are faced with many external or internal (the increase of customized product rescheduling , process reliability,..) changes. Therefore, monitoring and quality management activities for these…