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We consider the mutation--selection differential equation with pairwise interaction (or, equivalently, the diploid mutation--selection equation) and establish the corresponding ancestral process, which is a random tree and a variant of the…

概率论 · 数学 2023-04-26 Ellen Baake , Fernando Cordero , Sebastian Hummel

Consider any locally checkable labeling problem $\Pi$ in rooted regular trees: there is a finite set of labels $\Sigma$, and for each label $x \in \Sigma$ we specify what are permitted label combinations of the children for an internal node…

分布式、并行与集群计算 · 计算机科学 2022-09-05 Alkida Balliu , Sebastian Brandt , Yi-Jun Chang , Dennis Olivetti , Jan Studený , Jukka Suomela , Aleksandr Tereshchenko

We study the problem of maximizing the number of full degree vertices in a spanning tree $T$ of a graph $G$; that is, the number of vertices whose degree in $T$ equals its degree in $G$. In cubic graphs, this problem is equivalent to…

组合数学 · 数学 2022-11-11 Sarah Acquaviva , Deepak Bal

In this paper, we focus on the prediction phase of a random forest and study the problem of representing a bag of decision trees using a smaller bag of decision trees, where we only consider binary decision problems on the binary domain and…

机器学习 · 计算机科学 2024-02-06 Tatsuya Akutsu , Avraham A. Melkman , Atsuhiro Takasu

This work is divided into three parts. The first part concerns polynomials in one variable with all real roots. We consider linear transformations that preserve real rootedness, as well as matrices that preserve interlacing. The second part…

经典分析与常微分方程 · 数学 2008-03-11 Steve Fisk

Phylogenetic networks generalize phylogenetic trees by allowing the modelization of events of reticulate evolution. Among the different kinds of phylogenetic networks that have been proposed in the literature, the subclass of binary…

数据结构与算法 · 计算机科学 2020-07-01 Gabriel Cardona , Joan Carles Pons , Celine Scornavacca

We analyze a class of spatial random spanning trees built on a realization of a homogeneous Poisson point process of the plane. This tree has a simple radial structure with the origin as its root. We first use stochastic geometry arguments…

概率论 · 数学 2007-05-23 Francois Baccelli , Charles Bordenave

One approach to estimating a species tree from a collection of gene trees is to first estimate probabilities of clades from the gene trees, and then to construct the species tree from the estimated clade probabilities. While a greedy…

种群与进化 · 定量生物学 2012-11-14 Elizabeth S. Allman , James H. Degnan , John A. Rhodes

Billey et al. [arXiv:1507.04976] have recently discovered a surprisingly simple formula for the number $a_n(\sigma)$ of leaf-labelled rooted non-embedded binary trees (also known as phylogenetic trees) with $n\geq 1$ leaves, fixed (for the…

组合数学 · 数学 2016-03-08 Éric Fusy

We consider the problem of PAC-learning decision trees, i.e., learning a decision tree over the n-dimensional hypercube from independent random labeled examples. Despite significant effort, no polynomial-time algorithm is known for learning…

机器学习 · 计算机科学 2008-12-05 Adam Tauman Kalai , Shang-Hua Teng

Weighted recursive trees are built by adding successively vertices with predetermined weights to a tree: each new vertex is attached to a parent chosen at random with probability proportional to its weight. In the case where the total…

概率论 · 数学 2022-07-12 Michel Pain , Delphin Sénizergues

Graceful tree conjecture is a well-known open problem in graph theory. Here we present a computational approach to this conjecture. An algorithm for finding graceful labelling for trees is proposed. With this algorithm, we show that every…

离散数学 · 计算机科学 2010-08-20 Wenjie Fang

Recent work has proven the existence of extreme inbreeding in a European ancestry sample taken from the contemporary UK population \cite{nature_01}. This result brings our attention again to a math problem related to inbreeding family trees…

种群与进化 · 定量生物学 2021-09-08 C. Jarne , F A. Gómez Albarracín , M. Caruso

Accessibility percolation is a new type of percolation problem inspired by evolutionary biology. To each vertex of a graph a random number is assigned and a path through the graph is called accessible if all numbers along the path are in…

统计力学 · 物理学 2013-04-04 Stefan Nowak , Joachim Krug

We show that the transience or recurrence of a random walk in certain random environments on an arbitrary infinite locally finite tree is determined by the branching number of the tree, which is a measure of the average number of branches…

概率论 · 数学 2007-05-23 Robin Pemantle , Russell Lyons

We investigate the directed random walk on hierarchic trees. Two cases are investigated: random variables on deterministic trees with a continuous branching, and random variables on the trees constructed trough the random branching process.…

统计力学 · 物理学 2015-06-12 David B. Saakian

We study a family of tree-type diagrams that arise in studies of the cumulant expansion in discrete Erd\H os-R\'enyi random matrix models. Using a version of the Pr\" ufer code, we obtain an explicit expression for the number of tree-type…

组合数学 · 数学 2024-12-16 O. Khorunzhiy

Cayley's formula states that the number of labelled trees on $n$ vertices is $n^{n-2}$, and many of the current proofs involve complex structures or rigorous computation. We present a bijective proof of the formula by providing an…

组合数学 · 数学 2014-09-08 Steven Hao , Andrew He , Ray Li , Scott Wu

We consider a Gibbs distribution over all spanning trees of an undirected, edge weighted finite graph, where, up to normalization, the probability of each tree is given by the product of its edge weights. Defining the weighted degree of a…

离散数学 · 计算机科学 2024-10-18 Enrique Fita Sanmartín , Christoph Schnörr , Fred A. Hamprecht

We study the growth of a time-ordered rooted tree by probabilistic attachment of new vertices to leaves. We construct a likelihood function of the leaves based on the connectivity of the tree. We take such connectivity to be induced by the…

数据结构与算法 · 计算机科学 2020-11-03 Nomvelo Sibisi