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The Burrows-Wheeler transform (BWT) is a permutation whose applications are prevalent in data compression and text indexing. The bijective BWT (BBWT) is a bijective variant of it. Although it is known that the BWT can be constructed in…

Locally Checkable Labeling (LCL) problems are graph problems in which a solution is correct if it satisfies some given constraints in the local neighborhood of each node. Example problems in this class include maximal matching, maximal…

Memory and computation efficient deep learning architec- tures are crucial to continued proliferation of machine learning capabili- ties to new platforms and systems. Binarization of operations in convo- lutional neural networks has shown…

Previous research on the Adiar BDD package has been successful at designing algorithms capable of handling large Binary Decision Diagrams (BDDs) stored in external memory. To do so, it uses consecutive sweeps through the BDDs to resolve…

The efficient deployment of large language models (LLMs) in online settings requires optimizing inference performance under stringent latency constraints, particularly the time-to-first-token (TTFT) and time-per-output-token (TPOT). This…

Burrows-Wheeler transform (BWT) is an invertible text transformation that, given a text $T$ of length $n$, permutes its symbols according to the lexicographic order of suffixes of $T$. BWT is one of the most heavily studied algorithms in…

We introduce the following elementary scheduling problem. We are given a collection of n jobs, where each job has an integer length as well as a set Ti of time intervals in which it can be feasibly scheduled. Given a parameter B, the…

The shortest paths problem is a fundamental challenge in graph theory, with a broad range of potential applications. The algorithms based on matrix multiplication exhibits excellent parallelism and scalability, but is constrained by high…

The problem of finding aperiodic low auto-correlation binary sequences (LABS) presents a significant computational challenge, particularly as the sequence length increases. Such sequences have important applications in communication…

Despite recent advances in training recurrent neural networks (RNNs), capturing long-term dependencies in sequences remains a fundamental challenge. Most approaches use backpropagation through time (BPTT), which is difficult to scale to…

This paper performs the analysis necessary to bound the running time of known, efficient algorithms for generating all longest common subsequences. That is, we bound the running time as a function of input size for algorithms with time…

It is known that the exact form of the Burrows-Wheeler-Transform (BWT) of a string collection depends, in most implementations, on the input order of the strings in the collection. Reordering strings of an input collection affects the…

The suffix array is an efficient data structure for in-memory pattern search. Suffix arrays can also be used for external-memory pattern search, via two-level structures that use an internal index to identify the correct block of suffix…

Highly-repetitive collections of strings are increasingly being amassed by genome sequencing and genetic variation experiments, as well as by storing all versions of human-generated files, like webpages and source code. Existing indexes for…

In this paper, we study the Learning With Errors problem and its binary variant, where secrets and errors are binary or taken in a small interval. We introduce a new variant of the Blum, Kalai and Wasserman algorithm, relying on a…

Cumulative memory -- the sum of space used per step over the duration of a computation -- is a fine-grained measure of time-space complexity that was introduced to analyze cryptographic applications like password hashing. It is a more…

The prevalent use of Byte Pair Encoding (BPE) in Large Language Models (LLMs) facilitates robust handling of subword units and avoids issues of out-of-vocabulary words. Despite its success, a critical challenge persists: long tokens, rich…

One of the biggest open problems in external memory data structures is the priority queue problem with DecreaseKey operations. If only Insert and ExtractMin operations need to be supported, one can design a comparison-based priority queue…

Sublinear time quantum algorithms have been established for many fundamental problems on strings. This work demonstrates that new, faster quantum algorithms can be designed when the string is highly compressible. We focus on two popular and…

Simple and fast decoding is one of the main advantages of LZ77-type text encoding used in many popular file compressors such as gzip and 7zip. With the recent introduction of external memory algorithms for Lempel-Ziv factorization there is…