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Many physical systems are described by probability distributions that evolve in both time and space. Modeling these systems is often challenging to due large state space and analytically intractable or computationally expensive dynamics. To…

生物物理 · 物理学 2019-07-03 Oliver K. Ernst , Tom Bartol , Terrence Sejnowski , Eric Mjolsness

Many computer vision applications involve modeling complex spatio-temporal patterns in high-dimensional motion data. Recently, restricted Boltzmann machines (RBMs) have been widely used to capture and represent spatial patterns in a single…

计算机视觉与模式识别 · 计算机科学 2017-10-24 Siqi Nie , Ziheng Wang , Qiang Ji

We introduce a high dimensional symplectic map, modeling a large system consisting of weakly interacting chaotic subsystems, as a toy model to analyze the interplay between single-particle chaotic dynamics and particles interactions in…

混沌动力学 · 物理学 2011-11-10 Massimo Falcioni , Luigi Palatella , Simone Pigolotti , Lamberto Rondoni , Angelo Vulpiani

Biochemical networks play a crucial role in biological systems, implementing a broad range of vital functions. They normally operate at low copy numbers and in spatial settings, but this is often ignored and well-stirred conditions are…

分子网络 · 定量生物学 2017-05-25 Thomas R. Sokolowski , Pieter Rein ten Wolde

Macroscopic dynamical descriptions of complex physical systems are crucial for understanding and controlling material behavior. With the growing availability of data and compute, machine learning has become a promising alternative to…

计算物理 · 物理学 2026-03-24 Mengyi Chen , Pengru Huang , Kostya S. Novoselov , Qianxiao Li

Multi-Agent Reinforcement Learning involves agents that learn together in a shared environment, leading to emergent dynamics sensitive to initial conditions and parameter variations. A Dynamical Systems approach, which studies the evolution…

多智能体系统 · 计算机科学 2025-01-03 David Goll , Jobst Heitzig , Wolfram Barfuss

Efficient sampling of the Boltzmann distribution of molecular systems is a long-standing challenge. Recently, instead of generating long molecular dynamics simulations, generative machine learning methods such as normalizing flows have been…

机器学习 · 计算机科学 2024-08-06 Henrik Schopmans , Pascal Friederich

The moments of spatial probabilistic systems are often given by an infinite hierarchy of coupled differential equations. Moment closure methods are used to approximate a subset of low order moments by terminating the hierarchy at some order…

机器学习 · 计算机科学 2019-05-30 Oliver K. Ernst , Tom Bartol , Terrence Sejnowski , Eric Mjolsness

We define a message-passing algorithm for computing magnetizations in Restricted Boltzmann machines, which are Ising models on bipartite graphs introduced as neural network models for probability distributions over spin configurations. To…

机器学习 · 计算机科学 2020-12-02 Burak Çakmak , Manfred Opper

Prior distributions of binarized natural images are learned by using a Boltzmann machine. According the results of this study, there emerges a structure with two sublattices in the interactions, and the nearest-neighbor and…

机器学习 · 统计学 2016-10-25 Tomoyuki Obuchi , Hirokazu Koma , Muneki Yasuda

Graphical models are powerful tools for modeling high-dimensional data, but learning graphical models in the presence of latent variables is well-known to be difficult. In this work we give new results for learning Restricted Boltzmann…

机器学习 · 计算机科学 2020-07-28 Surbhi Goel , Adam Klivans , Frederic Koehler

A Boltzmann machine is a stochastic neural network that has been extensively used in the layers of deep architectures for modern machine learning applications. In this paper, we develop a Boltzmann machine that is capable of modelling…

统计力学 · 物理学 2016-10-18 Giacomo Torlai , Roger G. Melko

Complex behaviour in many systems arises from the stochastic interactions of spatially distributed particles or agents. Stochastic reaction-diffusion processes are widely used to model such behaviour in disciplines ranging from biology to…

统计力学 · 物理学 2016-08-23 David Schnoerr , Ramon Grima , Guido Sanguinetti

Graphical models are a rich language for describing high-dimensional distributions in terms of their dependence structure. While there are algorithms with provable guarantees for learning undirected graphical models in a variety of…

机器学习 · 计算机科学 2018-11-07 Guy Bresler , Frederic Koehler , Ankur Moitra , Elchanan Mossel

We propose a hierarchy of multi-level kinetic Monte Carlo methods for sampling high-dimensional, stochastic lattice particle dynamics with complex interactions. The method is based on the efficient coupling of different spatial resolution…

数值分析 · 数学 2012-08-06 Evangelia Kalligiannaki , Markos A. Katsoulakis , Petr Plechac

How smart can a micron-sized bag of chemicals be? How can an artificial or real cell make inferences about its environment? From which kinds of probability distributions can chemical reaction networks sample? We begin tackling these…

Context is an essential capability for robots that are to be as adaptive as possible in challenging environments. Although there are many context modeling efforts, they assume a fixed structure and number of contexts. In this paper, we…

机器人学 · 计算机科学 2018-03-05 Fethiye Irmak Doğan , Hande Çelikkanat , Sinan Kalkan

The simulation of complex stochastic network dynamics arising, for instance, from models of coupled biomolecular processes remains computationally challenging. Often, the necessity to scan a models' dynamics over a large parameter space…

定量方法 · 定量生物学 2013-03-14 Tiago Ramalho , Marco Selig , Ulrich Gerland , Torsten A. Enßlin

Boltzmann machines are undirected graphical models with two-state stochastic variables, in which the logarithms of the clique potentials are quadratic functions of the node states. They have been widely studied in the neural computing…

机器学习 · 计算机科学 2013-02-01 Neil D. Lawrence , Christopher M. Bishop , Michael I. Jordan

A Restricted Boltzmann Machine (RBM) is an unsupervised machine-learning bipartite graphical model that jointly learns a probability distribution over data and extracts their relevant statistical features. As such, RBM were recently…

机器学习 · 计算机科学 2019-02-19 Jérôme Tubiana , Simona Cocco , Rémi Monasson
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