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Self-generated gradients have atttracted a lot of attention in the recent biological literature. It is considered as a robust strategy for a group of cells to find its way during a long journey. This note is intended to discuss various…

偏微分方程分析 · 数学 2021-09-15 Mete Demircigil , Vincent Calvez , Roxana Sublet

We study the effect of chemotactic signaling among mesenchymal cells. We show that the particular physiology of the mesenchymal cells allows one-dimensional collapse in contrast to the case of bacteria, and that the mesenchymal…

细胞行为 · 定量生物学 2009-11-10 Carlos Escudero

We experimentally investigate how aerotactic bacteria, confined within a thin liquid film between two solid substrates, respond to a controlled oxygen gradient. We find that the total bacterial number density dictates which mechanism…

软凝聚态物质 · 物理学 2026-04-07 Minjun Kim , Joonwoo Jeong

Many motile biological cells navigate along concentration gradients of signaling molecules: This chemotaxis guides for instance sperm cells from marine invertebrates, which have to find egg cells in the ocean. While chemotaxis has been…

生物物理 · 物理学 2022-09-21 Steffen Lange , Benjamin M. Friedrich

Cells and organisms follow aligned structures in their environment, a process that can generate persistent migration paths. Kinetic transport equations are a popular modelling tool for describing biological movements at the mesoscopic…

细胞行为 · 定量生物学 2021-01-13 Nadia Loy , Thomas Hillen , Kevin John Painter

A chemotaxis-diffusion-convection coupling system for describing a form of buoyant convection in which the fluid develops convection cells and plume patterns will be investigated numerically in this study. Based on the two-dimensional…

流体动力学 · 物理学 2015-02-19 Yannick Deleuze , Chen-Yu Chiang , Marc Thiriet , Tony W. H. Sheu

Kinetic-transport equations that take into account the intra-cellular pathways are now considered as the correct description of bacterial chemotaxis by run and tumble. Recent mathematical studies have shown their interest and their…

偏微分方程分析 · 数学 2018-06-13 Benoît Perthame , Weiran Sun , Min Tang

Many phenomena in biology involve both reactions and chemotaxis. These processes can clearly influence each other, and chemotaxis can play an important role in sustaining and speeding up the reaction. In continuation of our earlier work, we…

偏微分方程分析 · 数学 2015-06-04 Alexander Kiselev , Lenya Ryzhik

Bacteria seem masters of chemotaxis, yet recent work suggests otherwise. Henry Mattingly and colleagues (Nature Physics, 2026) argue that Escherichia coli uses only a small fraction of the sensory information available at its surface,…

细胞行为 · 定量生物学 2026-01-16 Robert G. Endres

Flagellated bacteria, such as Escherichia coli, perform directed motion in gradients of concentration of attractants and repellents in a process called chemotaxis. The E. coli chemotaxis signaling pathway is a model for signal transduction,…

生物物理 · 物理学 2015-03-11 Anne-Florence Bitbol , Ned S. Wingreen

The motion of a pair of micro-wedges ("carriers") in a turbulent bacterial bath is explored using computer simulations with explicit modeling of the bacteria and experiments. The orientation of the two micro-wedges is parallel and fixed by…

软凝聚态物质 · 物理学 2015-07-21 Andreas Kaiser , Andrey Sokolov , Igor S. Aranson , Hartmut Löwen

We consider the chemotaxis problem for a one-dimensional system. To analyze the interaction of bacteria and attractant we use a modified Keller-Segel model which accounts attractant absorption. To describe the system we use the chemotaxis…

生物物理 · 物理学 2017-02-15 Alex Vasilev

Active Brownian motion with intermittent direction reversals are common in a class of bacteria like {\it Myxococcus xanthus} and {\it Pseudomonas putida}. We show that, for such a motion in two dimensions, the presence of the two time…

统计力学 · 物理学 2021-08-04 Ion Santra , Urna Basu , Sanjib Sabhapandit

Collective migration -- the directed, coordinated motion of many self-propelled agents -- is a fascinating emergent behavior exhibited by active matter that has key functional implications for biological systems. Extensive studies have…

生物物理 · 物理学 2022-06-07 Tapomoy Bhattacharjee , Daniel B. Amchin , Ricard Alert , J. A. Ott , Sujit S. Datta

We experimentally study the emergence of collective bacterial swimming, a phenomenon often referred to as bacterial turbulence. A phase diagram of the flow of 3D E. coli suspensions spanned by bacterial concentration, the swimming speed of…

软凝聚态物质 · 物理学 2021-03-09 Yi Peng , Zhengyang Liu , Xiang Cheng

Active systems comprised of self-propelled units show fascinating transitions from Brownian-like dynamics to collective coherent motion. Swirling of swimming bacteria is a spectacular example. This study demonstrates that a nematic liquid…

The interplay of chemotaxis and diffusion of nutrients or signaling chemicals in bacterial suspensions can produce a variety of structures with locally high concentrations of cells, including phyllotactic patterns, filaments, and…

偏微分方程分析 · 数学 2026-05-05 Bolun Li , Fengqiang Shi , Wendong Wang

We conducted a three-dimensional numerical simulation of bioconvection generated by oxygen-reactive chemotactic bacteria. This study investigated the bioconvection patterns, interference between plumes, and the wavelength of bioconvection…

生物物理 · 物理学 2022-12-07 Hideki Yanaoka , Tomomu Nishimura

The hydrodynamic interactions among bacterial cell bodies, flagella, and surrounding boundaries are essential for understanding bacterial motility in complex environments. In this study, we demonstrate that each slender flagellum can be…

软凝聚态物质 · 物理学 2025-01-07 Baopi Liu , Lu Chen , Ji Zhang

Self-propelled bacteria are marvels of nature with a potential to power dynamic materials and microsystems of the future. The challenge is in commanding their chaotic behavior. By dispersing swimming Bacillus subtilis in a…

软凝聚态物质 · 物理学 2016-12-21 Chenhui Peng , Taras Turiv , Yubing Guo , Qi-Huo Wei , Oleg D. Lavrentovich
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