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The remarkable rotational symmetry of the photosynthetic antenna complexes of purple bacteria has long been thought to enhance their light harvesting and excitation energy transport. We study the role of symmetry by modeling hypothetical…

化学物理 · 物理学 2016-09-20 Sima Baghbanzadeh , Ivan Kassal

Using a classical master equation that describes energy transfer over a given lattice, we explore how energy transfer efficiency along with the photon capturing ability depends on network connectivity, on transfer rates, and on volume…

统计力学 · 物理学 2010-10-26 Ji-Hyun Kim , Jianshu Cao

I consider how cell shape and environmental geometry affect the rate of nutrient capture and the consequent maximum growth rate of a cell, focusing on rod-like species like \textit{E.\ coli}. Simple modeling immediately implies that it is…

生物物理 · 物理学 2014-03-27 Jonathan Landy

Filamentous cyanobacteria growing in media with insufficient fixed nitrogen differentiate some cells into heterocysts, which fix nitrogen for the remaining vegetative cells. Transport studies have shown both periplasmic and cytoplasmic…

生物物理 · 物理学 2012-05-28 Aidan I. Brown , Andrew D. Rutenberg

Living organisms have to adjust to their surrounding in order to survive in stressful conditions. We study this mechanism in one of most primitive creatures - photosynthetic green sulfur bacteria. These bacteria absorb photons very…

Photosynthetic complexes improve the transfer of excitation energy from peripheral antennas to reaction centers in several ways. In particular, a downward energy funnel can direct excitons in the right direction, while coherent excitonic…

生物物理 · 物理学 2016-03-04 Sima Baghbanzadeh , Ivan Kassal

Microtubules are biological protein polymers with critical and diverse functions. Their structures share some similarities with photosynthetic antenna complexes, particularly in the ordered arrangement of photoactive molecules with large…

生物物理 · 物理学 2019-02-20 G. L. Celardo , M. Angeli , P. Kurian , T. J. A. Craddock

In a unified approach, we study the transport properties of periodic-on-average bi-layered photonic crystals, metamaterials and electron superlattices. Our consideration is based on the analytical expression for the localization length…

无序系统与神经网络 · 物理学 2012-05-15 F. M. Izrailev , N. M. Makarov

Photosystem I converts light into chemical energy with near-unity quantum efficiency,yet its energy-transfer and charge-separation mechanisms remain debated. Evolution has diversified PSI architectures. The unicellular red algae…

Unravelling the nature of energy transport in multi-chromophoric photosynthetic complexes is essential to extract valuable design blueprints for light-harvesting applications. Long-range exciton transport in such systems is facilitated by a…

The deformation of hexagonal lattices has attracted considerable attention due to its promising applications in straintronics. This study employs the tight-binding model to investigate the anisotropic spectrum, where electronic transport…

介观与纳米尺度物理 · 物理学 2026-04-20 Phusit Nualpijit , Bumned Soodchomshom

Chlorosomes are likely the largest and most efficient natural light-harvesting photosynthetic antenna systems. They are composed of large numbers of bacteriochlorophylls organized into supramolecular aggregates. We explore the microscopic…

化学物理 · 物理学 2012-08-28 Takatoshi Fujita , Jennifer C. Brookes , Semion K. Saikin , Alan Aspuru-Guzik

Many active systems are capable of forming intriguing patterns at scales significantly larger than the size of their individual constituents. Cyanobacteria are one of the most ancient and important phyla of organisms that has allowed the…

软凝聚态物质 · 物理学 2024-11-28 Jan Cammann , Mixon K. Faluweki , Nayara Dambacher , Lucas Goehring , Marco G. Mazza

Large-scale simulations of light-matter interaction in natural photosynthetic antenna complexes of the Chlorobium Tepidum green sulfur bacteria (GSB) containing more than one hundred thousand chlorophyll molecules, comparable with natural…

介观与纳米尺度物理 · 物理学 2025-10-24 Alessia Valzelli , Francesco Mattiotti , Jianshu Cao , G. Luca Celardo

Actin cables are linear cytoskeletal structures that serve as tracks for myosin-based intracellular transport of vesicles and organelles in both yeast and mammalian cells. In a yeast cell undergoing budding, cables are in constant dynamic…

生物物理 · 物理学 2017-04-12 Lishibanya Mohapatra , Bruce L. Goode , Jane Kondev

Motivated by recent experiments showing the buckling of microtubules in cells, we study theoretically the mechanical response of, and force propagation along elastic filaments embedded in a non-linear elastic medium. We find that, although…

软凝聚态物质 · 物理学 2009-11-13 Moumita Das , Alex J. Levine , F. C. MacKintosh

Cells contain elaborate and interconnected networks of protein polymers which make up the cytoskeleton. The cytoskeleton governs the internal positioning and movement of vesicles and organelles, and controls dynamic changes in cell…

生物物理 · 物理学 2017-01-24 Lishibanya Mohapatra , Bruce L. Goode , Predrag Jelenkovic , Rob Phillips , Jane Kondev

We developed methods for protein synthesis and performed two-dimensional electronic spectroscopy (2D-ES) to examine the influence of pigment arrangement on the photoexcitation dynamics of light-harvesting proteins in phycobilisome. We…

生物物理 · 物理学 2026-01-29 Masaaki Tsubouchi , Takatoshi Fujita , Motoyasu Adachi , Ryuji Itakura

In photosynthetic organisms, the energy of light during illumination is absorbed by the antenna complexes, which is transmitted by excitons and is either absorbed by the reaction centers (RCs), which have been closed in this way, or emitted…

统计力学 · 物理学 2021-05-12 Jean-Christian Anglès d'Auriac , Ferenc Iglói

Monolayers of transition-metal dichalcogenides have shown that uniaxial strain changes both the photoluminescence emission energy and intensity. The changes are attributed to the band-structure evolution under tensile strain where both the…

材料科学 · 物理学 2026-05-19 Lee Grimberg , Svyatoslav Kostyukovets , Moshe G. Harats