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The development of novel pharmaceuticals represents a significant challenge in modern science, with substantial costs and time investments. Deep generative models have emerged as promising tools for accelerating drug discovery by…

原子物理 · 物理学 2025-05-20 Adarsh Singh

Identifying the relations that exist between words (or entities) is important for various natural language processing tasks such as, relational search, noun-modifier classification and analogy detection. A popular approach to represent the…

计算与语言 · 计算机科学 2017-09-06 Huda Hakami , Danushka Bollegala

Advancements in neural machinery have led to a wide range of algorithmic solutions for molecular property prediction. Two classes of models in particular have yielded promising results: neural networks applied to computed molecular…

Discovering new drug molecules is a pivotal yet challenging process due to the near-infinitely large chemical space and notorious demands on time and resources. Numerous generative models have recently been introduced to accelerate the drug…

计算工程、金融与科学 · 计算机科学 2025-12-23 Shitong Luo , Wenhao Gao , Zuofan Wu , Jian Peng , Connor W. Coley , Jianzhu Ma

The olfactory system of male moths is exquisitely sensitive to pheromones emitted by females and transported in the environment by atmospheric turbulence. Moths respond to minute amounts of pheromones and their behavior is sensitive to the…

定量方法 · 定量生物学 2014-11-14 Antonio Celani , Emmanuel Villermaux , Massimo Vergassola

Mathematical models are increasingly used in both academia and the pharmaceutical industry to understand how phenotypes emerge from systems of molecular interactions. However, their current construction as monolithic sets of equations…

分子网络 · 定量生物学 2007-10-19 Aneil Mallavarapu , Matthew Thomson , Benjamin Ullian , Jeremy Gunawardena

Forming a molecular candidate set that contains a wide range of potentially effective compounds is crucial to the success of drug discovery. While most databases and machine-learning-based generation models aim to optimize particular…

计算工程、金融与科学 · 计算机科学 2023-03-08 Yutong Xie , Ziqiao Xu , Jiaqi Ma , Qiaozhu Mei

Lexical ambiguity presents a profound and enduring challenge to the language sciences. Researchers for decades have grappled with the problem of how language users learn, represent and process words with more than one meaning. Our work…

计算与语言 · 计算机科学 2023-04-27 Benedetta Cevoli , Chris Watkins , Yang Gao , Kathleen Rastle

A mechanism is proposed for increasing selectivity of olfactory bulb projection neurons as compared to the olfactory receptor neurons, which could operate under low odor concentration, when the lateral inhibition mechanism becomes…

神经元与认知 · 定量生物学 2021-11-09 Alexander Vidybida

Odor source localization is a fundamental challenge in molecular communication, environmental monitoring, disaster response, industrial safety, and robotics. In this study, we investigate three major approaches: Bayesian filtering, machine…

信号处理 · 电气工程与系统科学 2025-02-12 Ayse Sila Okcu , Ozgur B. Akan

Machine learning accelerates molecular property prediction, yet state-of-the-art Large Language Models and Graph Neural Networks operate as black boxes. In drug discovery, where safety is critical, this opacity risks masking false…

机器学习 · 计算机科学 2026-03-03 Oscar Rivera , Ziqing Wang , Matthieu Dagommer , Abhishek Pandey , Kaize Ding

Many machine learning algorithms represent input data with vector embeddings or discrete codes. When inputs exhibit compositional structure (e.g. objects built from parts or procedures from subroutines), it is natural to ask whether this…

机器学习 · 计算机科学 2019-04-09 Jacob Andreas

There is a huge and confusing literature about inorganic crystal structure prediction. The word "prediction" is used sometimes as meaning "structure determination" since the process described needs the knowledge of the chemical composition…

材料科学 · 物理学 2007-05-23 Armel Le Bail

Compositionality is a key property for dealing with complexity, which has been studied from many points of view in diverse fields. Particularly, the composition of individual computations (or programs) has been widely studied almost since…

计算机科学中的逻辑 · 计算机科学 2022-06-06 Damian Arellanes

The advent of molecular biology has led to the identification of definitive causative factors for a number of diseases, most of which are monogenic. Causes for most common diseases across the population, however, seem elusive and cannot be…

定量方法 · 定量生物学 2013-10-03 Sepehr Ehsani

Non-native speakers show difficulties with spoken word processing. Many studies attribute these difficulties to imprecise phonological encoding of words in the lexical memory. We test an alternative hypothesis: that some of these…

计算与语言 · 计算机科学 2021-03-12 Yevgen Matusevych , Herman Kamper , Thomas Schatz , Naomi H. Feldman , Sharon Goldwater

Deep learning is transforming many areas in science, and it has great potential in modeling molecular systems. However, unlike the mature deployment of deep learning in computer vision and natural language processing, its development in…

计算物理 · 物理学 2021-03-19 Jun Zhang , Yao-Kun Lei , Zhen Zhang , Junhan Chang , Maodong Li , Xu Han , Lijiang Yang , Yi Isaac Yang , Yi Qin Gao

In real-world object recognition, there are numerous object classes to be recognized. Conventional image recognition based on supervised learning can only recognize object classes that exist in the training data, and thus has limited…

计算机视觉与模式识别 · 计算机科学 2022-10-13 Kohei Uehara , Tatsuya Harada

This article examines recent research in molecular communications from a telecommunications system design perspective. In particular, it focuses on channel models and state-of-the-art physical layer techniques. The goal is to provide a…

新兴技术 · 计算机科学 2015-07-28 Weisi Guo , Taufiq Asyhari , Nariman Farsad , H. Birkan Yilmaz , Bin Li , Andrew Eckford , Chan-Byoung Chae

Determining the aqueous solubility of molecules is a vital step in many pharmaceutical, environmental, and energy storage applications. Despite efforts made over decades, there are still challenges associated with developing a solubility…

材料科学 · 物理学 2022-09-05 Gihan Panapitiya , Michael Girard , Aaron Hollas , Vijay Murugesan , Wei Wang , Emily Saldanha