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So far mutations analysis was performed in terms of transitions and trasversions, so on the basis of the molecule, or in terms of GC-content and isochors, through the quantification of GC->AT mutations over AT->GC mutations. We tried a…

其他定量生物学 · 定量生物学 2014-11-19 Valentina Agoni

A sequence of reversals that takes a signed permutation to the identity is perfect if at no step a common interval is broken. Determining a parsimonious perfect sequence of reversals that sorts a signed permutation is NP-hard. Here we show…

组合数学 · 数学 2009-05-18 Mathilde Bouvel , Cedric Chauve , Marni Mishna , Dominique Rossin

Baxter permutations are known to be in bijection with a wide number of combinatorial objects. Previously, it was shown that each of these objects had a natural involution which was carried equivariantly by the known bijections, and the…

组合数学 · 数学 2017-10-20 Kevin Dilks

Given a graph, we associate each edge with the transposition which exchanges the endvertices. Fixing a linear order on the edge set, we obtain a permutation of the vertices. D\'enes proved that the permutation is a full cyclic permutation…

组合数学 · 数学 2024-04-04 Shuhei Tsujie , Ryo Uchiumi

Permutation Matrices are a well known class of matrices which encode the elements of the symmetric group on $d$ elements as a square $d\times d$ matrix. Motivated by [4], we define a similar class of matrices which are a generalization of…

环与代数 · 数学 2024-03-06 Steven Robert Lippold

A permutation is called {\it {block-wise simple}} if it contains no interval of the form $p_1\oplus p_2$ or $p_1 \ominus p_2$. We present this new set of permutations and explore some of its combinatorial properties. We present a generating…

组合数学 · 数学 2023-03-24 Eli Bagno , Estrella Eisenberg , Shulamit Reches , Moriah Sigron

Permutations are usually enumerated by size, but new results can be found by enumerating them by inversions instead, in which case one must restrict one's attention to indecomposable permutations. In the style of the seminal paper by Simion…

组合数学 · 数学 2025-05-28 Atli Fannar Franklín

We present a general theorem characterizing the relationship between the prime base $p$ representations of non-negative integers $x$ and their positive integer powers, $x^n$. For any positive integer $l$, the theorem establishes the…

数论 · 数学 2019-07-04 John S. McCaskill , Peter R. Wills

In this dissertation, we explore the structure of inversion graphs of permutations--a class of graphs that naturally arises by representing each permutation as a graph, where vertices correspond to entries and edges encode inversions.…

组合数学 · 数学 2025-06-30 Sean Mandrick

Let S_n(321) (respectively, S_n(132)) denote the set of all permutations of {1,2,...,n} that avoid the pattern 321 (respectively, the pattern 132). Elizalde and Pak gave a bijection Theta from S_n(321) to S_n(132) that preserves the numbers…

组合数学 · 数学 2010-08-27 Dan Saracino

This paper is continuation of the systematic study of distribution of quadrant marked mesh patterns. We study quadrant marked mesh patterns on up-down and down-up permutations, also known as alternating and reverse alternating permutations,…

组合数学 · 数学 2012-05-04 Sergey Kitaev , Jeffrey Remmel

We present identities for permutations with fixed points. The formulas are based on successive derivations or integrations of the determinant of a particular matrix.

组合数学 · 数学 2025-11-10 Jean-Christophe Pain

Given observations from a stationary time series, permutation tests allow one to construct exactly level $\alpha$ tests under the null hypothesis of an i.i.d. (or, more generally, exchangeable) distribution. On the other hand, when the null…

统计理论 · 数学 2020-09-09 Joseph P. Romano , Marius A. Tirlea

An algorithm is presented for unranking permutations in transposition order: Given a seed s\in N, the algorithm produces a permutation P(s) that differs from the permutation P(s+1) by the transposition of two elements.

组合数学 · 数学 2008-06-10 Konstantinos A. Blekos

We consider the problem of factoring permutations as a product of special types of transpositions, namely, those transpositions involving two positions with bounded distances. In particular, we investigate the minimum number, $\delta$, such…

组合数学 · 数学 2015-06-08 Zejun Huang , Chi-Kwong Li , Sharon H. Li , Nung-Sing Sze

We propose new positive definite kernels for permutations. First we introduce a weighted version of the Kendall kernel, which allows to weight unequally the contributions of different item pairs in the permutations depending on their ranks.…

机器学习 · 统计学 2018-06-13 Yunlong Jiao , Jean-Philippe Vert

This dissertation presents a multifaceted look into the structural decomposition of permutation classes. The theory of permutation patterns is a rich and varied field, and is a prime example of how an accessible and intuitive definition…

组合数学 · 数学 2014-10-13 Cheyne Homberger

A permutation P on {1,..,N} is a_fast_forward_permutation_ if for each m the computational complexity of evaluating P^m(x)$ is small independently of m and x. Naor and Reingold constructed fast forward pseudorandom cycluses and involutions.…

密码学与安全 · 计算机科学 2010-11-02 Boaz Tsaban

We find a formula for the number of permutations of $[n]$ that have exactly $s$ runs up and down. The formula is at once terminating, asymptotic, and exact.

组合数学 · 数学 2007-05-23 E. Rodney Canfield , Herbert S. Wilf

An infinite permutation is a linear ordering of the set of non-negative integers. Generally, the properties of infinite permutations analogous to those of infinite words show some resemblances and some differences between permutations and…

组合数学 · 数学 2009-11-09 S. V. Avgustinovich , A. E. Frid , T. Kamae , P. V. Salimov