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We study evolutionary processes induced by spatio-temporal dynamics in prebiotic evolution. Using numerical simulations we demonstrate that hypercycles emerge from complex interaction structures in multispecies systems. In this work we also…

种群与进化 · 定量生物学 2007-05-23 Pan-Jun Kim , Hawoong Jeong

Environmental heterogeneity can drive genetic heterogeneity in expanding populations; mutant strains may emerge that trade overall growth rate for an improved ability to survive in patches that are hostile to the wild type. This…

种群与进化 · 定量生物学 2023-03-06 Thomas Tunstall , Tim Rogers , Wolfram Möbius

Mutualistic interactions, where individuals from different species can benefit from each other, are widespread across ecosystems. This study develops a general deterministic model of mutualism involving two populations, assuming that…

种群与进化 · 定量生物学 2026-02-26 Chloë Mian , Sylvain Billiard , Violaine Llaurens , Charline Smadi

Spatial patterning can be crucially important for understanding the behavior of interacting populations. Here we investigate a simple model of parasite and host populations in which parasites are random walkers that must come into contact…

种群与进化 · 定量生物学 2015-09-07 J. J. Dong , B. Skinner , N. Breecher , B. Schmittmann , R. K. P. Zia

Autocatalysis is thought to have played an important role in the earliest stages of the origin of life. An autocatalytic cycle (AC) is a set of reactions that results in stoichiometric increase in its constituent chemicals. When the…

种群与进化 · 定量生物学 2024-07-29 Alex M. Plum , Christopher P. Kempes , Zhen Peng , David A. Baum

Evolving systems, be it an antibody repertoire in the face of mutating pathogens or a microbial population exposed to varied antibiotics, constantly search for adaptive solutions in time-varying fitness landscapes. Generalists correspond to…

生物物理 · 物理学 2020-07-01 Shenshen Wang , Lei Dai

Genetic drift at the frontiers of two-dimensional range expansions of microorganisms can frustrate local cooperation between different genetic variants, demixing the population into distinct sectors. In a biological context, mutualistic or…

种群与进化 · 定量生物学 2014-04-08 Maxim O. Lavrentovich , David R. Nelson

An organism that is newly introduced into an existing population has a survival probability that is dependent on both the population density of its environment and the competition it experiences with the members of that population.…

种群与进化 · 定量生物学 2024-12-17 Jason M. Gray , Rowan J. Barker-Clarke , Jacob G. Scott , Michael Hinczewski

Mutualistic interactions benefit both partners, promoting coexistence and genetic diversity. Spatial structure can promote cooperation, but spatial expansions may also make it hard for mutualistic partners to stay together, since genetic…

种群与进化 · 定量生物学 2014-02-26 Melanie JI Muller , Beverly I Neugeboren , David R Nelson , Andrew W Murray

Mounting evidence indicates that our planet might experience runaway effects associated to rising temperatures and ecosystem overexploitation, leading to catastrophic shifts on short time scales. Remediation scenarios capable of…

定量方法 · 定量生物学 2015-03-18 Ricard Solé , Salva Duran-Nebreda , Raul Montañez

It has been suggested that major transitions in evolution require the emergence of novelties, often associated to the cooperative behaviour of previously existing objects or agents. A key innovation involves the first cooperative…

适应与自组织系统 · 物理学 2015-08-07 Jordi Piñero , Ricard Solé

This study investigates the role of spatial segregation, prompted by competition avoidance, as a key mechanism for emergent coexistence within microbial communities. Recognizing these communities as complex adaptive systems, we challenge…

物理与社会 · 物理学 2024-03-12 Mattia Mattei , Alex Arenas

Can prelife proceed without cell division? A recently proposed mechanism suggests that transient compartmentalization could have preceded cell division in prebiotic scenarios. Here, we study transient compartmentalization dynamics in the…

种群与进化 · 定量生物学 2019-12-17 Alex Blokhuis , Philippe Nghe , Luca Peliti , David Lacoste

Metapopulation models have been instrumental in demonstrating the ecological impact of landscape structure on the survival of a focal species in complex environments. However, extensions to multiple species with arbitrary dispersal networks…

Artificial ecosystems provide an additional experimental tool to support laboratory work, field work, and theoretical development in competitive exclusion research. A novel application of a spatiotemporal agent based model is presented…

种群与进化 · 定量生物学 2023-06-01 John C. Stevenson

Emerging marine infectious diseases pose a substantial threat to marine ecosystems and the conservation of their biodiversity. Compartmental models of epidemic transmission in marine sessile organisms, available only recently, are based on…

种群与进化 · 定量生物学 2022-11-03 Àlex Giménez-Romero , Federico Vazquez , Cristóbal López , Manuel A. Matías

Understanding how species persist under interacting stressors is a central challenge in ecology. We develop a spatially explicit reaction-diffusion framework to investigate competing species in landscapes shaped by climate variability,…

种群与进化 · 定量生物学 2026-02-02 Ton Viet Ta

Biological evolution of a population is governed by the fitness landscape, which is a map from genotype to fitness. However, a fitness landscape depends on the organisms environment, and evolution in changing environments is still poorly…

种群与进化 · 定量生物学 2022-09-26 Suman G Das , Joachim Krug , Muhittin Mungan

Conjugation is the primary mechanism of horizontal gene transfer that spreads antibiotic resistance among bacteria. Although conjugation normally occurs in surface-associated growth (e.g., biofilms), it has been traditionally studied in…

定量方法 · 定量生物学 2014-02-26 Peter D. Freese , Kirill S. Korolev , Jose I. Jimenez , Irene A. Chen

Given an endogenous timescale set by invasion in a constant environment, we introduced periodic temporal variation in competitive superiority by alternating the species' propagation rates. By manipulating habitat size and introduction rate,…

种群与进化 · 定量生物学 2011-05-10 Lauren O'Malley , G. Korniss , Sai Satya Praveen Mungara , Thomas Caraco
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